Local Nucleotide BLAST
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This tool will run a local BLAST search against our phage database. This will include some genomes that are not yet in GenBank and thus not accessible via NCBI BLAST.

Choose program to use and database to search
Program Database

Enter sequence below in FASTA format

Or load it from disk

Set subsequence: From To

Advanced Options

The query sequence is NOT filtered for low complexity regions by default.

Filter Low complexity Mask for lookup table only

Expect Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Graphical Overview

Alignment view

Descriptions Alignments Color schema

NCBI BLAST