Local Protein BLAST

This tool will run a local BLAST search against our protein databases. This includes all proteins from the most recent Phamerator update. Proteins marked "Draft" are from auto-annotated files.

Choose program to use and database to search
Program Database

Enter sequence below in FASTA format

Or load it from disk

Set subsequence: From To

Advanced Options

The query sequence is NOT filtered for low complexity regions by default.

Filter Low complexity Mask for lookup table only

Expect Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Graphical Overview

Alignment view

Descriptions Alignments Color schema