Notes for MooMoo

CDS 8807 - 8992
    /note=frameshift, Join(8071..8559;8561..8992)

CDS 28084 - 28386
    /note=TMHMM predicted transmembrane domain.

CDS 28388 - 28621
    /note=No membrane potential as predicted by TMHMM2.0. Ignore membrane protein match.

CDS 28618 - 29007
    /note=TMHMM 2.0 predicts four strong transmembrane domains.

CDS complement (29709 - 29918)
    /note=Zinc-finger-like domain at N-terminus.

CDS complement (30838 - 31044)
    /note=TMHMM confirms one predicted transmembrane domain at N-terminus. Related to phage shock protein and holin.

CDS complement (31052 - 31651)
    /note=TMHMM predicts a transmembrane domain 40-60.

CDS 35254 - 35472
    /note=Start called at -4 instead of -1 because a terminating ribosome is only required to move 2 bases instead of 5 bases to reinitiate translation of this gene.
    /note= Matches Yoshi_60 antirepressor but match does not contain the Yoshi_60 antirepressor domain.

CDS 44993 - 45469
    /note=It has structural features of a helicase loading inhibitor and therefore might be a regulator of replication initiation.

CDS 47063 - 47215
    /note=May need to be deleted.

CDS 47716 - 47931
    /note=No evidence for HNH endonuclease in PhrostyMug. There may be a Zn ribbon domain common to eukaryotic RNA polymerases.

CDS 49425 - 49586
    /note=Uncertain start site.

CDS 49816 - 50469
    /note=Zinc finger or ribbon - like domain is probable.

CDS 50666 - 50992
    /note=Related to pfam10544 and perhaps endonuclease.

CDS 51272 - 51382
    /note=Weak evidence for a function:   transcriptional regulator; AlpA-like

CDS 51379 - 51864
    /note=Even though the start at 51424 was called by everything, the -4 favors the slightly less efficient start site at 51379. The start at 51379 includes all of the coding capacity where the start at 51424 did not. This fits a whole string of -4 overlaps for the previous genes.