Propionibacterium phage ATCC29399BC
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage ATCC29399BC
Discovery Information
Isolation HostPropionibacterium acnes ATCC 29399
Found ByUnavailable
Year Found1978
Location FoundUnavailable
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 25, 2012
Sequencing FacilityUC Davis Genome Center
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage30000
Genome length (bp)29516
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTCGTACGGCTT
GC Content54.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBU
Subcluster--
Other Cluster Members
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

ATCC29399BC_1
(Original GeneMark call @bp 2 ** not called by Glimmer)

ATCC29399BC_2
(Original GeneMark call @bp 417 ** not called by Glimmer)

ATCC29399BC_3
(Original GeneMark call @bp 1886; Glimmer calls start at 2318)

ATCC29399BC_4
(Original GeneMark call @bp 3218 ** not called by Glimmer)

ATCC29399BC_5
(Original GeneMark call @bp 4077 ** not called by Glimmer)

ATCC29399BC_6
(Original GeneMark call @bp 4644 ** not called by Glimmer)

ATCC29399BC_7
(Original GeneMark call @bp 5635 ** not called by Glimmer)

ATCC29399BC_8
(Original GeneMark call @bp 6098 ** not called by Glimmer)

ATCC29399BC_9
(Original GeneMark call @bp 6452 ** not called by Glimmer)

ATCC29399BC_10
(Original GeneMark call @bp 6739)

ATCC29399BC_11
(Original GeneMark call @bp 7150 ** not called by Glimmer)

ATCC29399BC_12
(Original GeneMark call @bp 7812 ** not called by Glimmer)

ATCC29399BC_13
(Original GeneMark call @bp 8207 ** not called by Glimmer)

ATCC29399BC_14
(Original GeneMark call @bp 8502; Glimmer calls start at 9450)

ATCC29399BC_15
(Original GeneMark call @bp 11334; Glimmer calls start at 11283)

ATCC29399BC_16
(Original GeneMark call @bp 12232)

ATCC29399BC_17
(Original GeneMark call @bp 13397; Glimmer calls start at 14078)

ATCC29399BC_18
(This gene wasn t called here, but was called in a others; sequence is conserved and coding potential is there)

ATCC29399BC_19
(Original GeneMark call @bp 14532 ** not called by Glimmer)

ATCC29399BC_20
(Original GeneMark call @bp 15572; Glimmer calls start at 15398)

ATCC29399BC_21
(Original GeneMark call @bp 16265)

ATCC29399BC_22
(Original GeneMark call @bp 17240)

ATCC29399BC_23
(Original GeneMark call @bp 17632)

ATCC29399BC_24
(Original GeneMark call @bp 17920)

ATCC29399BC_25
(Original GeneMark call @bp 18254)

ATCC29399BC_26
(Original GeneMark call @bp 19311)

ATCC29399BC_27
(Original GeneMark call @bp 19505)

ATCC29399BC_28
(Original GeneMark call @bp 20049)

ATCC29399BC_29
(Original GeneMark call @bp 20609)

ATCC29399BC_30
(Original GeneMark call @bp 21324)

ATCC29399BC_31
(This gene was not called here, but is annotated in P14.4 and PA6; sequence is conserved and coding potential is there.)

ATCC29399BC_32
(Original GeneMark call @bp 21881; Glimmer calls start at 21878)

ATCC29399BC_33
(Original GeneMark call @bp 22741)

ATCC29399BC_34
(Original GeneMark call @bp 23243)

ATCC29399BC_35
(Original GeneMark call @bp 23696)

ATCC29399BC_36
(Original GeneMark call @bp 24634)

ATCC29399BC_37
(Original GeneMark call @bp 24986)

ATCC29399BC_38
(Original GeneMark call @bp 25094 ** not called by Glimmer)

ATCC29399BC_39
(Original GeneMark call @bp 25291)

ATCC29399BC_40
(Original GeneMark call @bp 25515)

ATCC29399BC_41
(Original GeneMark call @bp 26116)

ATCC29399BC_42
(Original GeneMark call @bp 26497)

ATCC29399BC_43
(Original GeneMark call @bp 26845; Glimmer calls start at 26911)

ATCC29399BC_44

ATCC29399BC_45
(Original Glimmer call @bp 28982 has strength 2.48; This was called in a different frame, but this orf matches gene from other P. acnes phages)

ATCC29399BC_46
(Original Glimmer call @bp 29134 has strength 11.92)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJX262225
Refseq NumberNC_018851