Rhodococcus phage Alpacados
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Detailed Information for Phage Alpacados
Discovery Information
Isolation HostRhodococcus erythropolis RIA 643
Found ByVarun Iyengar
Year Found2014
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.442222 N, 79.956389 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 21, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1763
Genome length (bp)46493
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGCCGTGAT
GC Content58.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCA
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Alpacados_1

Alpacados_2

Alpacados_3

Alpacados_6
(lysin A)

Alpacados_7
(terminase)

Alpacados_8
(portal protein)

Alpacados_9
(capsid maturation protease)

Alpacados_10
(scaffolding protein)

Alpacados_11
(major capsid protein)

Alpacados_12

Alpacados_13
(head-to-tail connector complex protein)

Alpacados_14
(head-to-tail connector complex protein)

Alpacados_15

Alpacados_16

Alpacados_17
(major tail protein)

Alpacados_18
(tail assembly chaperone)

Alpacados_19
(tail assembly chaperone)

Alpacados_20
(tape measure protein)

Alpacados_21
(minor tail protein)

Alpacados_22
(minor tail protein)

Alpacados_23
(minor tail protein)

Alpacados_24
(holin)

Alpacados_25

Alpacados_26
(minor tail protein)

Alpacados_27

Alpacados_28
(integrase (S-int))

Alpacados_29
(excise)

Alpacados_30

Alpacados_31
(deoxycytidylate deaminase)

Alpacados_32

Alpacados_33

Alpacados_34

Alpacados_35
(DNA polymerase I)

Alpacados_36
(resolvase)

Alpacados_37
(ThyX thymidylate synthase)

Alpacados_38

Alpacados_39

Alpacados_40
(ribonucleotide reductase)

Alpacados_41

Alpacados_42
(helix-turn-helix DNA binding domain)

Alpacados_43
(phosphoesterase)

Alpacados_44

Alpacados_45
(NrdH glutaredoxin)

Alpacados_46

Alpacados_47
(DNA primase)

Alpacados_48
(DNA primase)

Alpacados_49

Alpacados_50
(endonuclease VII)

Alpacados_51

Alpacados_52
(DnaB-like dsDNA helicase)

Alpacados_53

Alpacados_54

Alpacados_55
(RecB-like exonuclease)

Alpacados_56

Alpacados_57
(immunity repressor)

Alpacados_58

Alpacados_59

Alpacados_60

Alpacados_61

Alpacados_62

Alpacados_63
(ArdA-like antirestriction protein)

Alpacados_64

Alpacados_65

Alpacados_66

Alpacados_67

Alpacados_68

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH271291
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 4
Pitt Freezer Box Grid# B6
Available Files
Final DNAMaster FileDownload
GenBank File for PhameratorDownload