Gordonia phage Anamika
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Detailed Information for Phage Anamika
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAnjna Nair
Year Found2016
Location FoundPittsburgh , PA Unites States of America
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.44556 N, 79.96278 W Map
Discovery NotesI found this phage in a direct isolation of a soil sample from Sutherland West. Soil was collected at an elevation of 1120 ft and at coordinates 40º26'44"N 79º57'46"W. The surrounding environment around the location grassy, however the soil was collected in an area devoid of grass. Soil was collected in a hot and humid environment. Soil was slightly moist but mostly dry since the past 24 hours have been hot with a temperature around 30-32 ºC. The ambient temperature around was around 30 ºC.
Naming NotesAnamika is a Sanskrit word meaning "person without name"
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 15, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage907
Genome length (bp)73851
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length151 bp
GC Content59.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS3
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesThe plaques formed from this phage are clear, round and very small. The size of the plaques are around 0.5 mm.
MorphotypeSiphoviridae
Number of tRNAs1
Has been Phamerated?Yes
Gene List

Click to View

Anamika_1

Anamika_2
(DNA binding protein)

Anamika_3

Anamika_4

Anamika_5
(DNA primase)

Anamika_6
(terminase small subunit)

Anamika_7
(terminase large subunit)

Anamika_8
(portal protein)

Anamika_9

Anamika_10

Anamika_11
(capsid maturation protease)

Anamika_12
(scaffolding protein)

Anamika_13
(major capsid protein)

Anamika_14
(head-to-tail connector protein)

Anamika_15
(head-to-tail connector protein)

Anamika_16
(head-to-tail connector protein)

Anamika_17
(head-to-tail connector protein)

Anamika_18
(head-to-tail connector protein)

Anamika_19
(head-to-tail connector protein)

Anamika_20
(major tail protein)

Anamika_22
(tail assembly chaperone)

Anamika_23
(tail assembly chaperone)

Anamika_24
(tape measure protein)

Anamika_25
(minor tail protein)

Anamika_26
(minor tail protein)

Anamika_27
(minor tail protein)

Anamika_28

Anamika_29

Anamika_30

Anamika_31

Anamika_32

Anamika_33

Anamika_34

Anamika_35
(lysin A, N-acetyl-beta-D-muramidase domain)

Anamika_36
(lysin A, peptidase domain)

Anamika_37

Anamika_38

Anamika_39

Anamika_40

Anamika_41
(endonuclease/helicase)

Anamika_42

Anamika_43

Anamika_44

Anamika_45

Anamika_46
(DNA methylase)

Anamika_47

Anamika_48

Anamika_49
(pyrophosphohydrolase)

Anamika_50
(resolvase)

Anamika_51

Anamika_52
(DNA polymerase III sliding clamp beta)

Anamika_53

Anamika_54
(exonuclease)

Anamika_55
(helix-turn-helix DNA binding protein)

Anamika_56

Anamika_57
(DNA helicase)

Anamika_58

Anamika_59

Anamika_60

Anamika_61
(helix-turn-helix DNA binding protein)

Anamika_62

Anamika_63

Anamika_64

Anamika_65

Anamika_66

Anamika_67

Anamika_68

Anamika_69

Anamika_70

Anamika_71

Anamika_72

Anamika_73

Anamika_74

Anamika_75

Anamika_76

Anamika_77

Anamika_78

Anamika_79

Anamika_80
(cobalamin biosynthesis protein)

Anamika_81
(AAA-ATPase)

Anamika_82

Anamika_83

Anamika_84

Anamika_85

Anamika_86

Anamika_87

Anamika_88

Anamika_89

Anamika_90

Anamika_91

Anamika_92

Anamika_93

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG099935
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 42
Pitt Freezer Box Grid# B2
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload