Gordonia phage Attis
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Detailed Information for Phage Attis
Discovery Information
Isolation HostGordonia terrae 3612
Found ByMelanie Umbaugh
Year Found2015
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature31°C
GPS Coordinates40.443889 N, 79.957222 W Map
Discovery NotesSoil was collected from a flower garden of marigolds outside of Thackeray Hall at the University of Pittsburgh. The marigolds that were near the soil collection site were wilting and decaying. The sample was collected 2 to 3 inches from the surface and the garden had been watered approximately an hour before collection. It was 87*F.
Naming NotesThe name Attis comes from Greek mythology. Attis was the god of rebirth and resurrection. The terms "rebirth" and "resurrection" seemed to describe bacteriophage activity: infecting and inducing lysis in a host cell in order to produce new phage particles.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 12, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage949
Genome length (bp)47881
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTACCAGGGGGA
GC Content66.8%
Sequencing Notessmall amount of reads have deletion from 23,973 bp to 24059 bp, total deletion 87 bp inclusive
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ2
Other Cluster Members
Plaque NotesDual plaque morphology has been observed. Small, pinprick plaques are 1 mm and clear. Other larger plaques are 3 mm and are surrounded by a cloudy ring.
Final annotation complete?Yes
Number of Genes74
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU963247
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Final DNAMaster FileDownload