Streptomyces phage Attoomi
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Detailed Information for Phage Attoomi
Discovery Information
Isolation HostStreptomyces azureus NRRL B-2655
Found ByAhmad Sulaiman
Year Found2016
Location FoundNew Braunfels, TX United States
Finding InstitutionUniversity of North Texas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature24°C
GPS Coordinates29.711028 N, 98.133833 W Map
Discovery NotesThe soil sample was collected from Landa Park in New Braunfels, TX. The temperatures was 24°C, and the soil was wet. The sample was taken 2 cm under surface.
Naming NotesIt's a nickname for my wife that she likes the most.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 27, 2017
Sequencing FacilityUniversity of North Texas
Shotgun Sequencing MethodIllumina Sequencing
Genome length (bp)41872
Character of genome endsUnknown
Overhang Length11 bases
Overhang SequenceCGAAACGTGAT
GC Content69.7%
Sequencing NotesThere was a bizarre coverage pattern for this genome. More than 17,000 of the ~70,000 reads in the assembly began at exactly base 1. Usually, we see a buildup of reads at base 1 of defined-end genomes, but this was orders of magnitude higher than normal. This resulted in coverage levels of ~18000 for the first couple kb, dropping to about 500 after ~3 kb, and level out around 100 thereafter.

We're not sure what caused this, but it does appear from other evidence that this genome has defined ends and a 3' overhang, so it is reported as such.
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Other Cluster Members
Plaque NotesThe diameter is 1.5 mm . It makes clear zone in spot test
Final annotation complete?No
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Available Files
Plaque PictureDownload
EM PictureDownload