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Mycobacterium phage Ava3
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Detailed Information for Phage Ava3
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJordan Newhof
Year Found2011
Location FoundGrand Rapids, MI USA
Finding InstitutionCalvin College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates42.930441 N, 85.589264 W Map
Discovery NotesFound in dark very moist soil underneath a drain pipe on the campus of Calvin College
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 4, 2012
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage35
Genome length (bp)154466
Character of genome endsCircularly Permuted
GC Content64.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

Click to View

Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Pier (C1)

Pio (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Plaque NotesVery clear plaques that are about 1mm in diameter
MorphotypeMyoviridae
Final annotation complete?Yes
Number of Genes232
Number of tRNAs32
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

Click to View

Ava3_1

Ava3_2

Ava3_3
(nucleotidyltransferase)

Ava3_4

Ava3_5

Ava3_6

Ava3_7

Ava3_8

Ava3_9

Ava3_10

Ava3_11

Ava3_12

Ava3_13

Ava3_14

Ava3_15

Ava3_16

Ava3_17

Ava3_18

Ava3_19
(HIT domain hydrolase family)

Ava3_20

Ava3_21

Ava3_22

Ava3_23

Ava3_24

Ava3_25

Ava3_26

Ava3_27

Ava3_28

Ava3_29

Ava3_30
(Band-7)

Ava3_31

Ava3_32

Ava3_33

Ava3_34

Ava3_35

Ava3_36

Ava3_37

Ava3_38

Ava3_39

Ava3_40

Ava3_41

Ava3_42

Ava3_43

Ava3_44

Ava3_45

Ava3_46

Ava3_47

Ava3_48

Ava3_49

Ava3_50

Ava3_51

Ava3_52

Ava3_53

Ava3_54

Ava3_55

Ava3_56

Ava3_57

Ava3_58

Ava3_59

Ava3_60

Ava3_61

Ava3_62

Ava3_63

Ava3_64

Ava3_65

Ava3_66

Ava3_67

Ava3_68

Ava3_69

Ava3_70

Ava3_71

Ava3_72

Ava3_73

Ava3_74

Ava3_75

Ava3_76

Ava3_77

Ava3_78

Ava3_79

Ava3_80

Ava3_81

Ava3_82

Ava3_83

Ava3_84
(ParB-like domain)

Ava3_89

Ava3_90

Ava3_91
(Portal)

Ava3_92

Ava3_93

Ava3_94
(ThyX-like)

Ava3_95

Ava3_96
(phophoesterase)

Ava3_97

Ava3_98
(LysM domain)

Ava3_99

Ava3_100
(major capsid)

Ava3_101
(zinc-finger DNA binding domain)

Ava3_102

Ava3_103

Ava3_104

Ava3_105

Ava3_106

Ava3_107

Ava3_108

Ava3_109

Ava3_110

Ava3_111

Ava3_112

Ava3_113

Ava3_114

Ava3_115

Ava3_116

Ava3_117

Ava3_118

Ava3_119

Ava3_120

Ava3_121

Ava3_122
(N-acetyl transferase)

Ava3_123

Ava3_124

Ava3_125

Ava3_126

Ava3_127

Ava3_128

Ava3_129

Ava3_130

Ava3_131
(tail assembly chaperone)

Ava3_132
(tail assembly chaperone)

Ava3_133
(tapemeasure)

Ava3_134

Ava3_135

Ava3_136

Ava3_137
(minor tail protein)

Ava3_138

Ava3_139
(minor tail protein)

Ava3_140

Ava3_141
(Baseplate J)

Ava3_142
(HNH endonuclease domain)

Ava3_143

Ava3_144

Ava3_145

Ava3_146

Ava3_147

Ava3_148

Ava3_149

Ava3_150

Ava3_151

Ava3_152

Ava3_153

Ava3_156

Ava3_157
(peptidyl tRNA hydrolase domain)

Ava3_172
(D-ala-D-ala carboxypeptidase)

Ava3_173

Ava3_185

Ava3_186

Ava3_187
(terminase)

Ava3_188

Ava3_189

Ava3_190

Ava3_191

Ava3_192

Ava3_193

Ava3_194

Ava3_195

Ava3_196

Ava3_197
(ArgD-like)

Ava3_198

Ava3_199

Ava3_200

Ava3_201
(DnaC-like)

Ava3_202
(DnaB-like)

Ava3_203

Ava3_204
(DNA primase)

Ava3_205

Ava3_206
(DnaJ-domain)

Ava3_207

Ava3_208
(DNA pol III alpha subunit)

Ava3_209
(Release Factor 1)

Ava3_210
(RecA-like)

Ava3_211

Ava3_212

Ava3_213
(HNH endonuclease domain)

Ava3_214
(RusA-like)

Ava3_215

Ava3_216

Ava3_217

Ava3_218

Ava3_219

Ava3_220

Ava3_221

Ava3_224

Ava3_225

Ava3_226

Ava3_227

Ava3_228

Ava3_229

Ava3_230
(Ro-like)

Ava3_231

Ava3_232

Ava3_233

Ava3_234

Ava3_235

Ava3_236

Ava3_237
(glycosyl transferase)

Ava3_238

Ava3_239
(galactosyl transferase)

Ava3_240
(glycosyl transferase)

Ava3_241

Ava3_242
(glycosyl transferase)

Ava3_243

Ava3_244

Ava3_245

Ava3_246

Ava3_247
(LysinA)

Ava3_248
(Holin)

Ava3_249
(Lysin B)

Ava3_250

Ava3_251

Ava3_252

Ava3_253

Ava3_254

Ava3_255
(Polynucleotide kinase)

Ava3_256

Ava3_257

Ava3_258
(Serine-threonine kinase)

Ava3_259

Ava3_260

Ava3_261
(PurA-like)

Ava3_262

Ava3_263

Ava3_264

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJQ911768
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload