Mycobacterium phage Avocado
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Detailed Information for Phage Avocado
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByL. Hudson
Year Found2015
Location FoundGreensburg, PA United States of America
Finding InstitutionSeton Hill University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.308 N, 79.556 W Map
Discovery Notes-Taken from under a bench
-Just below mulch layer, dark in color
-Area was shaded
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage49
Genome length (bp)45389
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCCCATGGCAT
End Determination NotesClear buildups of reads on opposite strands separated by 10 bp.
GC Content68.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterG
SubclusterG2
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF141540
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 21
Pitt Freezer Box Grid# G7
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload