Mycobacterium phage Avrafan
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Detailed Information for Phage Avrafan
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByDan Russell
Year Found2008
Location FoundBrooklyn, NY USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.682647 N, 73.981224 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 20, 2011
Sequencing FacilityRoche/454
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage60
Genome length (bp)41901
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCCCCATGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterG
SubclusterG1
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes62
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJN699002
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 1
Pitt Freezer Box Grid# B5
Available Files
Plaque PictureDownload
Virtual Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload