Gordonia phage Benczkowski14
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Detailed Information for Phage Benczkowski14
Discovery Information
Isolation HostGordonia terrae 3612
Found ByMatthew Benczkowski
Year Found2015
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature17°C
GPS Coordinates40.443 N, 79.957 W Map
Discovery NotesFound on a cool day, moist soil, soil collected in the early morning. Soil was home to flowers.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 12, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage944
Genome length (bp)75380
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length1172 bp
GC Content59.5%
Sequencing Notesin seq file terminal repeat start 21840 to 23011 approx 2x reads
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS4
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
Number of Genes99
Has been Phamerated?Yes
Gene List

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Benczkowski14_1

Benczkowski14_2

Benczkowski14_3
(DNA-binding domain protein)

Benczkowski14_4

Benczkowski14_5

Benczkowski14_6

Benczkowski14_7

Benczkowski14_8
(DNA primase)

Benczkowski14_9
(terminase small subunit)

Benczkowski14_10
(terminase large subunit)

Benczkowski14_11
(portal protein)

Benczkowski14_12

Benczkowski14_13

Benczkowski14_14
(capsid maturation protease)

Benczkowski14_15
(scaffolding protein)

Benczkowski14_16
(major capsid protein)

Benczkowski14_17

Benczkowski14_18

Benczkowski14_19

Benczkowski14_20

Benczkowski14_21

Benczkowski14_22

Benczkowski14_23
(major tail protein)

Benczkowski14_24
(tail assembly chaperone)

Benczkowski14_25

Benczkowski14_26
(tape measure protein)

Benczkowski14_27

Benczkowski14_28
(minor tail protein)

Benczkowski14_29
(minor tail protein)

Benczkowski14_30

Benczkowski14_31
(membrane protein)

Benczkowski14_32

Benczkowski14_33
(lysin A)

Benczkowski14_34
(lysin A)

Benczkowski14_35

Benczkowski14_36

Benczkowski14_37

Benczkowski14_38
(nuclease/helicase)

Benczkowski14_39
(WhiB family transcription factor)

Benczkowski14_40

Benczkowski14_41

Benczkowski14_42
(DNA methylase)

Benczkowski14_43

Benczkowski14_44
(lysin B)

Benczkowski14_45
(nucleotide pyrophosphohydrolase)

Benczkowski14_46

Benczkowski14_47
(resolvase)

Benczkowski14_48

Benczkowski14_49

Benczkowski14_50
(DNA polymerase III beta subunit)

Benczkowski14_51

Benczkowski14_52
(exonuclease)

Benczkowski14_53
(HTH DNA-binding domain protein)

Benczkowski14_54

Benczkowski14_55

Benczkowski14_56

Benczkowski14_57
(DNA helicase)

Benczkowski14_58

Benczkowski14_59

Benczkowski14_60

Benczkowski14_61

Benczkowski14_62

Benczkowski14_63

Benczkowski14_64

Benczkowski14_65

Benczkowski14_66

Benczkowski14_67

Benczkowski14_68

Benczkowski14_69

Benczkowski14_70

Benczkowski14_71

Benczkowski14_72

Benczkowski14_73

Benczkowski14_74

Benczkowski14_75

Benczkowski14_77

Benczkowski14_78
(HNH endonuclease)

Benczkowski14_79

Benczkowski14_80

Benczkowski14_81

Benczkowski14_82
(cobalamin biosynthesis protein)

Benczkowski14_83

Benczkowski14_84

Benczkowski14_85

Benczkowski14_86
(AAA-ATPase)

Benczkowski14_87

Benczkowski14_88

Benczkowski14_89

Benczkowski14_90

Benczkowski14_91

Benczkowski14_92

Benczkowski14_93

Benczkowski14_94

Benczkowski14_95

Benczkowski14_96

Benczkowski14_97

Benczkowski14_98

Benczkowski14_99

Benczkowski14_100

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU963262
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 2
Pitt Freezer Box Grid# C8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload