Gordonia phage BirksAndSocks
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Detailed Information for Phage BirksAndSocks
Discovery Information
Isolation HostGordonia terrae 3612
Found ByEmily Hicks
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.395278 N, 79.954333 W Map
Discovery NotesThis phage was found outside of the Pittsburgh Athletic Association in Pittsburgh, PA. It was found on September 19, 2016 at approximately 1:50 pm. It was 79 degrees and partly cloudy. The soil was very moist and dark brown.
Naming NotesI think Birkenstocks and socks are funny.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 15, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1008
Genome length (bp)77354
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length191 bp
GC Content58.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS2
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesPlaques are small (.75 mm-1 mm) and clear.
Has been Phamerated?Yes
Gene List

Click to View

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(DNA primase)

BirksAndSocks_9
(terminase small subunit)

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(terminase large subunit)

BirksAndSocks_11
(portal protein)

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BirksAndSocks_14
(capsid maturation protease)

BirksAndSocks_15
(scaffolding protein)

BirksAndSocks_16
(major capsid protein)

BirksAndSocks_17
(head-to-tail connector protein)

BirksAndSocks_18
(head-to-tail connector protein)

BirksAndSocks_19
(head-to-tail connector protein)

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(head-to-tail connector protein)

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(head-to-tail connector protein)

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(head-to-tail connector protein)

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(major tail protein)

BirksAndSocks_25
(tail assembly chaperone)

BirksAndSocks_26
(tail assembly chaperone)

BirksAndSocks_27
(tape measure protein)

BirksAndSocks_28
(minor tail protein)

BirksAndSocks_29
(minor tail protein)

BirksAndSocks_30
(minor tail protein)

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BirksAndSocks_35

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BirksAndSocks_38
(lysin A, N-acetyl-beta-D-muramidase domain)

BirksAndSocks_39
(lysin A, peptidase domain)

BirksAndSocks_40

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(endonuclease/helicase)

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(DNA methylase)

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(lysin B)

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(nucleotide pyrophosphohydrolase)

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BirksAndSocks_57

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BirksAndSocks_60
(DNA polymerase III sliding clamp beta)

BirksAndSocks_61
(exonuclease)

BirksAndSocks_62
(helix-turn-helix DNA binding protein)

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BirksAndSocks_64
(DNA helicase)

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BirksAndSocks_68
(HTH DNA binding protein)

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(HNH endonuclease)

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(cobalamin biosynthesis protein)

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(AAA-ATPase)

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Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG099940
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 42
Pitt Freezer Box Grid# B10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload