Mycobacterium phage Breeniome
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Detailed Information for Phage Breeniome
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySabreen Afzal
Year Found2011
Location FoundJericho, NY USA
Finding InstitutionCUNY, Queens College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.779001 N, 73.53291 W Map
Discovery NotesDug from three inches to the grass's dirt from the backyard of a house.
The soil was moist and cool at touch, not clumped together.
The roots of the grass were visible in the soil samples.
The grass from which the soil was taken was rocky.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 29, 2012
Approximate Shotgun Coverage144
Genome length (bp)154434
Character of genome endsCircularly Permuted
GC Content64.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

Click to View

Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Derek (C1)

Dietrick (C1)

Doodle1 (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

HarrySpotter (C1)

HyRo (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Jessibeth14 (C1)

JustHall (C1)

Kamryn (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Lionheart (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

MrsHay (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

OaklaforG (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Roots515 (C1)

Salacia (C1)

SandySandal (C1)

Sauce (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Annotation StatusIn GenBank
Plaque NotesSize is less than one millimeter. Clear plaques (probably lytic growth).
MorphotypeMyoviridae
Number of Genes237
Number of tRNAs32
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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Breeniome_1

Breeniome_2

Breeniome_3
(nucleotidyltransferase)

Breeniome_4

Breeniome_5

Breeniome_6

Breeniome_7

Breeniome_8

Breeniome_9

Breeniome_10

Breeniome_11

Breeniome_12

Breeniome_13

Breeniome_14

Breeniome_15

Breeniome_16

Breeniome_17

Breeniome_18
(histidine triad domain protein)

Breeniome_19

Breeniome_20

Breeniome_21

Breeniome_22

Breeniome_23

Breeniome_24

Breeniome_25

Breeniome_26

Breeniome_27

Breeniome_28

Breeniome_29
(band 7 protein)

Breeniome_30

Breeniome_31

Breeniome_32

Breeniome_33

Breeniome_34

Breeniome_35

Breeniome_36

Breeniome_37

Breeniome_38

Breeniome_39

Breeniome_40

Breeniome_41

Breeniome_42

Breeniome_43

Breeniome_44

Breeniome_45

Breeniome_46

Breeniome_47

Breeniome_48

Breeniome_49

Breeniome_50

Breeniome_51

Breeniome_52

Breeniome_53

Breeniome_54

Breeniome_55

Breeniome_56

Breeniome_57

Breeniome_58

Breeniome_59

Breeniome_60

Breeniome_61

Breeniome_62

Breeniome_63

Breeniome_64
(HTH DNA binding protein)

Breeniome_65

Breeniome_66

Breeniome_67

Breeniome_68

Breeniome_69

Breeniome_70

Breeniome_71

Breeniome_72

Breeniome_73

Breeniome_74

Breeniome_75

Breeniome_76

Breeniome_77

Breeniome_78

Breeniome_79

Breeniome_80

Breeniome_81

Breeniome_82

Breeniome_83
(ParB-like domain protein)

Breeniome_88

Breeniome_89

Breeniome_90
(portal protein)

Breeniome_91

Breeniome_92

Breeniome_93
(ThyX-like domain protein)

Breeniome_94

Breeniome_95
(phosphoesterase)

Breeniome_96
(LysM domain protein)

Breeniome_97

Breeniome_98

Breeniome_99
(major capsid)

Breeniome_100

Breeniome_101

Breeniome_102

Breeniome_103

Breeniome_104

Breeniome_105

Breeniome_106

Breeniome_107

Breeniome_108

Breeniome_109

Breeniome_110

Breeniome_111

Breeniome_112

Breeniome_113

Breeniome_114

Breeniome_115

Breeniome_116

Breeniome_117

Breeniome_118

Breeniome_119

Breeniome_120

Breeniome_121

Breeniome_122

Breeniome_123

Breeniome_124

Breeniome_125

Breeniome_126

Breeniome_127

Breeniome_128

Breeniome_129
(tail assembly chaperone)

Breeniome_130
(tail assembly chaperone)

Breeniome_131
(tapemeasure)

Breeniome_132

Breeniome_133

Breeniome_134

Breeniome_135
(minor tail protein)

Breeniome_136

Breeniome_137
(minor tail protein)

Breeniome_138
(baseplate J)

Breeniome_139

Breeniome_140
(HNH endonuclease)

Breeniome_141

Breeniome_142
(HNH endonuclease)

Breeniome_143

Breeniome_144

Breeniome_145

Breeniome_146

Breeniome_147

Breeniome_148

Breeniome_149

Breeniome_150

Breeniome_151

Breeniome_152

Breeniome_153

Breeniome_154

Breeniome_158

Breeniome_159
(peptidyl tRNA hydrolase)

Breeniome_173

Breeniome_175
(D-ala-D-ala carboxypeptidase)

Breeniome_176

Breeniome_186

Breeniome_187
(helicase)

Breeniome_188

Breeniome_189

Breeniome_190

Breeniome_191

Breeniome_192

Breeniome_193

Breeniome_194

Breeniome_195

Breeniome_196

Breeniome_197
(aminotransferase)

Breeniome_198

Breeniome_199

Breeniome_200

Breeniome_201
(AAA-ATPase (DnaC-like))

Breeniome_202
(DnaB-like helicase)

Breeniome_203

Breeniome_204
(DNA primase)

Breeniome_205

Breeniome_206
(DnaJ-like domain)

Breeniome_207

Breeniome_208
(DNA polymerase III, alpha)

Breeniome_209
(RF1 protein)

Breeniome_210
(RecA-like protein)

Breeniome_211

Breeniome_212

Breeniome_213

Breeniome_214
(RusA-like protein)

Breeniome_215

Breeniome_216

Breeniome_217

Breeniome_218

Breeniome_219

Breeniome_220

Breeniome_221

Breeniome_224

Breeniome_225

Breeniome_226

Breeniome_227

Breeniome_228

Breeniome_229

Breeniome_230

Breeniome_231

Breeniome_232
(Ro protein)

Breeniome_233

Breeniome_234

Breeniome_235

Breeniome_236

Breeniome_237

Breeniome_238

Breeniome_239

Breeniome_240
(glycosyl transferase)

Breeniome_241
(galactosyl transferase)

Breeniome_242
(galactosyl transferase)

Breeniome_243
(galactosyl transferase)

Breeniome_244

Breeniome_245
(glycosyl transferase)

Breeniome_246

Breeniome_247

Breeniome_248

Breeniome_249

Breeniome_250
(lysin A)

Breeniome_251
(holin)

Breeniome_252
(lysin B)

Breeniome_253
(terminase)

Breeniome_254

Breeniome_255

Breeniome_256

Breeniome_257

Breeniome_258
(polynucleotide kinase)

Breeniome_259

Breeniome_260

Breeniome_261
(ser/thr kinase)

Breeniome_262

Breeniome_263

Breeniome_264
(PurA-like protein)

Breeniome_265

Breeniome_266

Breeniome_267

Breeniome_268

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKF006817
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2011CUNYbreeniomeSA
Pitt Freezer Box# 23
Pitt Freezer Box Grid# 60
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload