Mycobacterium phage Cali
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Detailed Information for Phage Cali
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByK. Pajcini
Year Found2003
Location FoundSanta Clara, CA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates37.355149 N, 121.954765 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 16, 2008
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodSanger Sequencing
Genome length (bp)155372
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

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Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Pier (C1)

Pio (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

MorphotypeMyoviridae
Final annotation complete?Yes
Number of Genes222
Number of tRNAs35
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

Click to View

Cali_1

Cali_2

Cali_3
(NrdC)

Cali_4

Cali_5

Cali_6

Cali_7

Cali_8

Cali_9

Cali_10

Cali_11

Cali_12

Cali_13

Cali_14

Cali_15

Cali_16

Cali_17

Cali_18

Cali_19

Cali_20

Cali_21

Cali_22

Cali_23

Cali_24

Cali_25

Cali_26

Cali_27

Cali_28

Cali_29

Cali_30

Cali_31

Cali_32

Cali_33

Cali_34

Cali_35

Cali_36

Cali_37

Cali_38

Cali_39

Cali_40

Cali_41

Cali_42

Cali_43

Cali_44

Cali_45

Cali_46

Cali_47

Cali_48

Cali_49

Cali_50

Cali_51

Cali_52

Cali_53

Cali_54

Cali_55

Cali_56

Cali_57

Cali_58

Cali_59

Cali_60

Cali_61

Cali_62

Cali_63

Cali_64

Cali_65

Cali_66

Cali_67

Cali_68

Cali_69

Cali_70

Cali_71

Cali_72

Cali_73

Cali_74

Cali_75

Cali_76

Cali_77

Cali_78

Cali_83

Cali_84

Cali_85

Cali_86

Cali_87

Cali_88
(ThyX)

Cali_89

Cali_90

Cali_91

Cali_92

Cali_93
(tape measure)

Cali_94

Cali_95

Cali_96

Cali_97

Cali_98

Cali_99

Cali_100

Cali_101

Cali_102

Cali_103

Cali_104

Cali_105

Cali_106

Cali_107

Cali_108

Cali_109

Cali_110

Cali_111

Cali_112

Cali_113

Cali_114

Cali_115

Cali_116

Cali_117

Cali_118

Cali_119

Cali_120

Cali_121

Cali_122

Cali_123

Cali_124

Cali_125

Cali_126

Cali_127

Cali_128

Cali_129

Cali_130

Cali_131
(P60 lipoprotein; putative LysA)

Cali_132

Cali_133

Cali_134

Cali_135

Cali_136
(HNH endonuclease)

Cali_137

Cali_138

Cali_139

Cali_140

Cali_141

Cali_142

Cali_143

Cali_144

Cali_145

Cali_146

Cali_147

Cali_148

Cali_152

Cali_153

Cali_169

Cali_181

Cali_182
(helicase)

Cali_183

Cali_184

Cali_185

Cali_186

Cali_187

Cali_188

Cali_189

Cali_190

Cali_191

Cali_192
(aminotransferase)

Cali_193

Cali_194

Cali_195
(DnaC)

Cali_196
(helicase DnaB)

Cali_197

Cali_198
(DNA primase)

Cali_199

Cali_200

Cali_201

Cali_202
(DNA pol III alpha)

Cali_203
(RF1)

Cali_204
(RecA)

Cali_205

Cali_206

Cali_207

Cali_208
(RusA)

Cali_209

Cali_210

Cali_211

Cali_212

Cali_213

Cali_214

Cali_215

Cali_218

Cali_219

Cali_220

Cali_221

Cali_222

Cali_223

Cali_224
(Ro)

Cali_225

Cali_226

Cali_227

Cali_228

Cali_229

Cali_230
(glycosyltransferase)

Cali_231

Cali_232

Cali_233

Cali_234

Cali_235

Cali_236

Cali_237

Cali_238

Cali_239

Cali_240
(LysA)

Cali_241

Cali_242
(LysB)

Cali_243

Cali_244

Cali_245

Cali_246

Cali_247

Cali_248
(PnK)

Cali_249

Cali_250

Cali_251

Cali_252
(kinase)

Cali_253

Cali_254
(PurA)

Cali_255

Cali_256

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionEU826471
Refseq NumberNC_011271
Available Files
Plaque PictureDownload
Virtual Digest PictureDownload
EM PictureDownload