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Mycobacterium phage Carcharodon
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Detailed Information for Phage Carcharodon
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Duplicates of this PhageTaralyn
Found ByAndrew Brannan, Nakia Lewis, Amanda Pitts
Year Found2013
Location FoundJacksonville, AL USA
Finding InstitutionJacksonville State University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates33.85425 N, 85.67559 W Map
Discovery NotesSoil collected on Sept. 02, 2013. Approximate depth of 10 cm. Soil was moist (adjacent to small creek) and ambient air temperature was 85 C.
Naming NotesGenus that includes the Great White Shark (Carcharodon carcharias).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 28, 2014
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage116
Sanger Finishing Reactions4
Genome length (bp)43680
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCCCGCCGCAATGG
GC Content66.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterN
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes71
Has been Phamerated?Yes
Gene List

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Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKM588359
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
Final DNAMaster FileDownload