Arthrobacter phage Chocolat
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Detailed Information for Phage Chocolat
Discovery Information
Isolation HostArthrobacter sp. ATCC 21022
Found ByVanessa Yuan
Year Found2015
Location FoundPhiladelphia , PA USA
Finding InstitutionCabrini University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.2311 N, 75.4119 W Map
Discovery NotesWith various of calcium chloride concentration up to 50mM, the plaques appear to be bigger in room temperature compare with the plates that incubated in 30 degree Celsius and 37 degree Celsius. The plates that incubated in 30 degree Celsius it showed small clear plaques with various CaCl concentrations include 0mM, 5mM, 25mM, and 50mM. However no plaques show on plates that incubated in 37 degree Celsius.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 15, 2015
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage834
Genome length (bp)69798
Character of genome endsCircularly Permuted
GC Content61.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAR
Subcluster--
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesProduces small clear plaques
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

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Chocolat_1

Chocolat_2

Chocolat_3
(terminase)

Chocolat_4
(portal protein)

Chocolat_5
(MuF-like minor capsid protein)

Chocolat_6

Chocolat_7

Chocolat_8

Chocolat_9

Chocolat_10
(scaffolding protein)

Chocolat_11
(capsid decoration protein)

Chocolat_12
(major capsid protein)

Chocolat_13

Chocolat_14

Chocolat_15
(minor tail protein)

Chocolat_16

Chocolat_17

Chocolat_18
(tail sheath protein)

Chocolat_19
(tail tube protein)

Chocolat_20

Chocolat_21

Chocolat_22
(tape measure protein)

Chocolat_23
(minor tail protein)

Chocolat_24
(minor tail protein)

Chocolat_25

Chocolat_26
(minor tail protein)

Chocolat_27
(minor tail protein)

Chocolat_28

Chocolat_29

Chocolat_30

Chocolat_31
(endolysin)

Chocolat_32
(holin)

Chocolat_33

Chocolat_34

Chocolat_35

Chocolat_36

Chocolat_37
(helix-turn-helix DNA binding domain protein)

Chocolat_38
(baseplate wedge protein)

Chocolat_39
(baseplate J protein)

Chocolat_40

Chocolat_41

Chocolat_42

Chocolat_43
(MRE11 double-strand break endo/exonuclease)

Chocolat_44

Chocolat_45

Chocolat_46
(RecE-like exonuclease)

Chocolat_47
(RecT-like ssDNA binding protein)

Chocolat_48

Chocolat_49

Chocolat_50

Chocolat_51

Chocolat_52

Chocolat_53

Chocolat_54

Chocolat_55

Chocolat_56

Chocolat_57

Chocolat_58

Chocolat_59

Chocolat_60

Chocolat_61

Chocolat_62

Chocolat_63

Chocolat_64

Chocolat_65

Chocolat_66

Chocolat_67

Chocolat_68

Chocolat_69

Chocolat_70

Chocolat_71

Chocolat_72
(endolysin)

Chocolat_73

Chocolat_74

Chocolat_75

Chocolat_76

Chocolat_77

Chocolat_78

Chocolat_79

Chocolat_80
(DNA methylase)

Chocolat_81

Chocolat_82
(DNA methylase)

Chocolat_83

Chocolat_84

Chocolat_85

Chocolat_86

Chocolat_87

Chocolat_88

Chocolat_89
(Cas4 family exonuclease)

Chocolat_90
(DNA helicase)

Chocolat_91

Chocolat_92
(nucleoside deoxyribosyltransferase)

Chocolat_93

Chocolat_94

Chocolat_95
(RusA-like resolvase)

Chocolat_96

Chocolat_97

Chocolat_98

Chocolat_99

Chocolat_100
(HNH endonuclease)

Chocolat_101
(ssDNA binding protein)

Chocolat_102

Chocolat_103

Chocolat_104

Chocolat_105
(DNA polymerase III sliding clamp)

Chocolat_106

Chocolat_107

Chocolat_108

Chocolat_109

Chocolat_110
(protease)

Chocolat_111
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKX670787
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Designator David Dunbar
SEA Lysate Titer 4.28x10^-7 pfu/uL
Date of SEA Lysate Titering Jun 18, 2015
Pitt Freezer Box# 149
Pitt Freezer Box Grid# B11
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload