Recently Added Phages

Bailey Neptune Chatty Raccoon Honk

Recently Modified Phages

Cybele Hyacinth ManRay Nagem SJay

Recently Finished Phages

BayC (BG) Nesbitt (BL) Azathoth (AN) Copper (AN) Sibs6 (A1)
Mycobacterium phage CrystalP
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage CrystalP
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByDeborah Jacobs-Sera
Year Found2015
Location FoundN. Huntingdon, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.326389 N, 79.677898 W Map
Discovery NotesCrystalP was found on Oct. 20, 2015 in soil collected from the same site as Rosebush and Echild.
Naming NotesNamed after a favorite co-worker and friend.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 12, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage500
Genome length (bp)76483
Character of genome ends3' Sticky Overhang
Overhang Length9 bases
Overhang SequenceCGCTTGTCA
GC Content63.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterE
Subcluster--
Other Cluster Members
Plaque NotesThe first plating displayed plaque morphology that looked like bigger~1.5mm) haloed plaques with 4 -8 tiny clearer plaques in the vicinity. This could not be replicated in further rounds of purification. Plaques are now consistently ~2mm with a clear center and turbid halo.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes143
Number of tRNAs2
Has been Phamerated?Yes
Gene List

Click to View

CrystalP_1

CrystalP_2

CrystalP_3

CrystalP_4

CrystalP_5

CrystalP_6
(terminase, small subunit)

CrystalP_7

CrystalP_8

CrystalP_9
(terminase, large subunit)

CrystalP_10

CrystalP_11
(portal protein)

CrystalP_12
(capsid maturation protease)

CrystalP_13
(major capsid protein)

CrystalP_14

CrystalP_15
(head-to-tail connector protein)

CrystalP_16
(head-to-tail connector protein)

CrystalP_17
(head-to-tail connector protein)

CrystalP_18

CrystalP_19
(major tail protein)

CrystalP_20
(tail assembly chaperone)

CrystalP_21
(tail assembly chaperone)

CrystalP_22
(tape measure protein)

CrystalP_23
(minor tail protein)

CrystalP_24
(minor tail protein)

CrystalP_25
(minor tail protein)

CrystalP_26
(minor tail protein)

CrystalP_27
(minor tail protein, D-ala-D-ala carboxypeptidase)

CrystalP_28

CrystalP_29

CrystalP_30
(helix-turn-helix DNA binding)

CrystalP_31

CrystalP_32
(lysin A)

CrystalP_33
(holin)

CrystalP_34

CrystalP_35
(lysin B)

CrystalP_36

CrystalP_37
(NrdH glutaredoxin)

CrystalP_38
(HNH endonuclease)

CrystalP_39

CrystalP_40
(lsr2-like family protein)

CrystalP_41

CrystalP_42

CrystalP_43

CrystalP_44

CrystalP_45

CrystalP_46

CrystalP_47

CrystalP_48

CrystalP_49

CrystalP_50

CrystalP_51

CrystalP_52
(integrase, (Y-int))

CrystalP_53

CrystalP_54

CrystalP_55
(helix-turn-helix DNA binding)

CrystalP_56

CrystalP_57

CrystalP_58

CrystalP_59

CrystalP_60

CrystalP_61

CrystalP_62

CrystalP_63

CrystalP_64

CrystalP_65

CrystalP_66
(exonuclease)

CrystalP_67

CrystalP_68
(ssDNA binding protein, ERF family)

CrystalP_69

CrystalP_70

CrystalP_71

CrystalP_72

CrystalP_73

CrystalP_74

CrystalP_75
(HNH endonuclease)

CrystalP_76

CrystalP_77

CrystalP_78

CrystalP_79

CrystalP_80
(DnaB dsDNA helicase)

CrystalP_81

CrystalP_82

CrystalP_83

CrystalP_84

CrystalP_85
(Hjc holliday junction resolvase)

CrystalP_86

CrystalP_87
(polynucleotide kinase)

CrystalP_88

CrystalP_89

CrystalP_90
(RNA ligase)

CrystalP_91
(helix-turn-helix DNA binding)

CrystalP_92
(WhiB family transcription factor)

CrystalP_93

CrystalP_94

CrystalP_95

CrystalP_96

CrystalP_97

CrystalP_98
(methyltransferase)

CrystalP_99
(ssDNA binding protein)

CrystalP_100
(ClpP protease)

CrystalP_101

CrystalP_102

CrystalP_103

CrystalP_104
(helix-turn-helix DNA binding)

CrystalP_105
(HNH endonuclease)

CrystalP_106

CrystalP_109

CrystalP_110

CrystalP_111

CrystalP_112

CrystalP_113

CrystalP_114
(DNA polymerase I)

CrystalP_115

CrystalP_116
(RecA DNA recombinase)

CrystalP_117

CrystalP_118

CrystalP_119

CrystalP_120

CrystalP_121

CrystalP_122

CrystalP_123

CrystalP_124

CrystalP_125

CrystalP_126

CrystalP_127

CrystalP_128
(helix-turn-helix DNA binding)

CrystalP_129

CrystalP_130

CrystalP_131

CrystalP_132

CrystalP_133

CrystalP_134

CrystalP_135

CrystalP_136

CrystalP_137

CrystalP_138

CrystalP_139

CrystalP_140

CrystalP_141

CrystalP_142

CrystalP_143

CrystalP_144

CrystalP_145

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKY319168
Refseq NumberNone yet
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload