Mycobacterium phage DTDevon
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Detailed Information for Phage DTDevon
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByDavid Temme
Year Found2012
Location FoundPhiladelphia, PA USA
Finding InstitutionSaint Joseph's University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.969769 N, 75.193753 W Map
Discovery NotesThe soil sample was taken from the Red Panda exhibit at the Philadelphia Zoo from moist wood chips. Soil sample depth was approximately 2 centimeters.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 15, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage400
Sanger Finishing Reactions10
Genome length (bp)156754
Character of genome endsCircularly Permuted
GC Content64.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

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Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Doodle1 (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Lionheart (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

OaklaforG (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

Salacia (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Plaque NotesPlaques were very turbid and appeared after approximately 24 hours. Mean plaque size was 1 mm.
MorphotypeMyoviridae
Final annotation complete?Yes
Number of Genes234
Number of tRNAs33
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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DTDevon_1

DTDevon_2

DTDevon_3
(Nucleotidyl transferase NrdC)

DTDevon_4

DTDevon_5

DTDevon_6

DTDevon_7

DTDevon_8

DTDevon_9

DTDevon_10

DTDevon_11

DTDevon_12

DTDevon_13

DTDevon_14

DTDevon_15

DTDevon_16

DTDevon_17

DTDevon_18

DTDevon_19

DTDevon_20

DTDevon_21

DTDevon_22

DTDevon_23

DTDevon_24

DTDevon_25

DTDevon_26
(HNH endonuclease)

DTDevon_27

DTDevon_28

DTDevon_29

DTDevon_30
(Band 7 protein)

DTDevon_31

DTDevon_32

DTDevon_33

DTDevon_34

DTDevon_35

DTDevon_36

DTDevon_37

DTDevon_38

DTDevon_39

DTDevon_40

DTDevon_41

DTDevon_42

DTDevon_43

DTDevon_44

DTDevon_45

DTDevon_46

DTDevon_47

DTDevon_48

DTDevon_49

DTDevon_50

DTDevon_51

DTDevon_52

DTDevon_53

DTDevon_54

DTDevon_55

DTDevon_56

DTDevon_57

DTDevon_58

DTDevon_59

DTDevon_60

DTDevon_61

DTDevon_62

DTDevon_63

DTDevon_64
(HTH DNA binding)

DTDevon_65

DTDevon_66

DTDevon_67

DTDevon_68

DTDevon_69

DTDevon_70

DTDevon_71

DTDevon_72

DTDevon_73

DTDevon_74

DTDevon_75

DTDevon_76

DTDevon_77

DTDevon_78

DTDevon_79

DTDevon_80

DTDevon_81

DTDevon_82

DTDevon_83

DTDevon_84
(DNA binding domain)

DTDevon_89

DTDevon_90

DTDevon_91
(Portal)

DTDevon_92

DTDevon_93

DTDevon_94
(Thymidylate synthase)

DTDevon_95

DTDevon_96

DTDevon_97
(LysM domain)

DTDevon_98

DTDevon_99

DTDevon_100
(Major capsid)

DTDevon_101

DTDevon_102

DTDevon_103

DTDevon_104

DTDevon_105

DTDevon_106

DTDevon_107

DTDevon_108

DTDevon_109

DTDevon_110

DTDevon_111

DTDevon_112

DTDevon_113

DTDevon_114

DTDevon_115
(Head Decoration)

DTDevon_116

DTDevon_117

DTDevon_118

DTDevon_119

DTDevon_120

DTDevon_121
(Acetyltransferase)

DTDevon_122

DTDevon_123

DTDevon_124

DTDevon_125

DTDevon_126

DTDevon_127
(Tail sheath)

DTDevon_128

DTDevon_129

DTDevon_130
(Tail Assembly Chaperone)

DTDevon_131
(Tail Assembly Chaperone)

DTDevon_132
(Tapemeasure)

DTDevon_133

DTDevon_134

DTDevon_135

DTDevon_136
(Minor tail)

DTDevon_137

DTDevon_138
(Minor tail)

DTDevon_139

DTDevon_140
(Baseplate J)

DTDevon_141

DTDevon_142

DTDevon_143

DTDevon_144

DTDevon_145
(Minor tail)

DTDevon_146

DTDevon_147

DTDevon_148

DTDevon_149

DTDevon_150

DTDevon_151

DTDevon_152

DTDevon_153

DTDevon_154

DTDevon_155

DTDevon_159

DTDevon_160
(Peptidyl-tRNA hydrolase)

DTDevon_174
(HNH endonuclease)

DTDevon_176
(D-alanyl-D-alanine carboxypeptidase)

DTDevon_177

DTDevon_189

DTDevon_190
(Helicase)

DTDevon_191

DTDevon_192

DTDevon_193

DTDevon_194

DTDevon_195

DTDevon_196

DTDevon_197

DTDevon_198

DTDevon_199

DTDevon_200
(Aminotransferase ArgD)

DTDevon_201

DTDevon_202

DTDevon_203

DTDevon_204
(DnaC-like DNA replication)

DTDevon_205
(DnaB-like helicase)

DTDevon_206

DTDevon_207
(DNA Primase)

DTDevon_208

DTDevon_209
(DnaJ-like domain)

DTDevon_210

DTDevon_211
(DNA polymerase III alpha subunit)

DTDevon_212
(RF-1 domain: peptide chain release factor.)

DTDevon_213
(Recombinase RecA-like)

DTDevon_214

DTDevon_215

DTDevon_216
(Homing endonuclease)

DTDevon_217
(Holliday junction resolvase (RusA) like)

DTDevon_218

DTDevon_219

DTDevon_220

DTDevon_221

DTDevon_222

DTDevon_223

DTDevon_224

DTDevon_225

DTDevon_228

DTDevon_229

DTDevon_230

DTDevon_231

DTDevon_232

DTDevon_233

DTDevon_234
(RO ribonucleoprotein)

DTDevon_235

DTDevon_236

DTDevon_237

DTDevon_238

DTDevon_239

DTDevon_240

DTDevon_241
(Glycosyl transferase)

DTDevon_242

DTDevon_243
(Glycosyl transferase)

DTDevon_244
(Glycosyl transferase)

DTDevon_245

DTDevon_246
(Glycosyl transferase)

DTDevon_247

DTDevon_248

DTDevon_249

DTDevon_250

DTDevon_251
(Lysin A)

DTDevon_252
(Holin)

DTDevon_253
(Lysin B)

DTDevon_254
(Terminase)

DTDevon_255

DTDevon_256

DTDevon_257

DTDevon_258

DTDevon_259
(Polynucleotide kinase)

DTDevon_260

DTDevon_261

DTDevon_262
(Ser/thr kinase)

DTDevon_263

DTDevon_264

DTDevon_265
(PurA-like Adenylosuccinate synthetase)

DTDevon_266

DTDevon_267

DTDevon_268

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKT365398
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload