Gordonia phage Dexdert
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Detailed Information for Phage Dexdert
Discovery Information
Isolation HostGordonia terrae 3612
Found ByKyle Timmer
Year Found2016
Location FoundGrandville, MI United States
Finding InstitutionCalvin College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.896563 N, 85.750597 W Map
Discovery NotesSoil was collected from under a pool deck. The soil was somewhat damp, relatively uniform, and contained some pieces of dead vegetation initially.
Naming NotesThe name is a mix of the words "Deck's Dirt," which is where the phage was isolated from (dirt underneath a pool deck)
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 1, 2017
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage357
Genome length (bp)55006
Character of genome endsCircularly Permuted
GC Content67.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDE
SubclusterDE3
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusBeing Annotated (Expected completion by 2/16/2019)
Plaque NotesPlaques started out very cloudy and hard to spot, but as time went on and more purifications were performed, it became more clear. Normal plaque size tended to be around 1-2 millimeters.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.01*10^9
Date of SEA Lysate Titering Nov 30, 2016
Pitt Freezer Box# 39
Pitt Freezer Box Grid# A2