Mycobacterium phage Dori
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Detailed Information for Phage Dori
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByErica Shepard
Year Found2008
Location FoundSanta Cruz, CA USA
Finding InstitutionUniversity of California, Santa Cruz
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates36.991383 N, 122.060867 W Map
Discovery NotesSoil
type: scum off bottom of fishpond
depth: 1 cm
temp: 73°F/23°C
environment: no/very little shade, underwater, fish present in water, near other water plants
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 11, 2011
Genome length (bp)64613
Character of genome endsCircularly Permuted
GC Content66.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Cluster Life CycleUnknown
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesPlaques were very small at first (pinpoint). They became larger (opaque) with other possible opaque plaques in the background. Opaque plaques in the background were picked and plated. The plaques were all opaque. After the lysate was sitting around for one month it was plated and some clear pinpoint plaques appeared among other opaque plaques.
MorphotypeSiphoviridae
Number of Genes93
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJN698995
Refseq NumberNC_023703
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2008 Dori UCSC
SEA Lysate Titer 8x10^8
Pitt Freezer Box# 1
Pitt Freezer Box Grid# F7
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload