The Actinobacteriophage Database

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Detailed Information for Phage HH92
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Former names	HumnaHumna92
Found By	Amanda Y. Chandler
Year Found	2011
Location Found	Machias , ME USA
Finding Institution	University of Maine, Machias
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Unknown
Isolation Temperature	Not entered
GPS Coordinates	44.708381 N, 67.458035 W Map
Discovery Notes	From compost pile behind Torrey Hall on The University of Maine at Machias campus.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 25, 2013
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Ion Torrent Sequencing
Approximate Shotgun Coverage	750
Sanger Finishing Reactions	9
Genome length (bp)	53746
Character of genome ends	3' Sticky Overhang
Overhang Length	14 bases
Overhang Sequence	TAAGCCGCGCGGTA
GC Content	67.4%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	Q
Subcluster	--
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Amochick Amymech Daegal DeepSoil15 Dewey Ein37 Evanesce Forge Gancho Giles Gravaillia Hadrien Hail HH92 Kinbote LilHazelnut Luke Luna22 OBUpride Ubuntu Webster2 Wishmaker
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	The plaques are small with no halos.
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Gene List	Click to View HH92_1 HH92_2 HH92_3 HH92_4 HH92_5 (terminase) HH92_6 (portal protein) HH92_7 (capsid maturation protease) HH92_8 (scaffolding protein) HH92_9 (major capsid protein) HH92_10 HH92_11 HH92_12 HH92_13 HH92_14 HH92_15 (major tail subunit) HH92_16 (tail assembly chaperone) HH92_17 (tail assembly chaperone) HH92_18 HH92_19 HH92_20 (tape measure protein) HH92_21 (minor tail protein) HH92_22 (minor tail protein) HH92_23 (minor tail protein) HH92_24 (minor tail protein) HH92_25 (minor tail protein) HH92_26 HH92_27 (minor tail protein) HH92_28 HH92_29 (integrase) HH92_30 (RDF protein) HH92_31 (lysin A) HH92_32 (lysin B) HH92_33 (holin) HH92_34 HH92_35 HH92_36 (minor tail protein) HH92_37 HH92_38 HH92_39 HH92_40 HH92_41 HH92_42 HH92_43 HH92_44 HH92_45 HH92_46 HH92_47 HH92_48 HH92_49 (Cro-like protein) HH92_50 HH92_51 HH92_52 HH92_53 HH92_54 (RecE-like protein) HH92_55 (RecT-like protein) HH92_56 HH92_57 HH92_58 HH92_59 HH92_60 HH92_61 HH92_62 HH92_63 (exonuclease) HH92_64 HH92_65 HH92_66 (DNA methylase) HH92_67 HH92_68 HH92_69 HH92_70 HH92_71 HH92_72 HH92_73 HH92_74 HH92_75 (WhiB) HH92_76 HH92_77 HH92_78 HH92_79 HH92_80 HH92_81 HH92_82 HH92_83 HH92_84
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KJ538722
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
SEA Designator	2011MEMAhumnahumna92AYC
Pitt Freezer Box#	25
Pitt Freezer Box Grid#	73
Available Files
EM Picture	Download

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