Detailed Information for Phage Jumbo |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | Amanda Weber |
Year Found | 2015 |
Location Found | Hudson, WI USA |
Finding Institution | University of Wisconsin-River Falls |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 30°C |
GPS Coordinates | 44.984444 N, 92.754444 W Map |
Discovery Notes | From Compost soil. Air temp was 69*F, sunny, no wind, low humidity, semi-moist soil with small pieces of leaves and other debris, 30mm deep. |
Naming Notes | The plaques were very small, so I named my phage Jumbo ironically. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Feb 17, 2016 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1323 |
Genome length (bp) | 78302 |
Character of genome ends | Direct Terminal Repeat |
Direct Terminal Repeat Length | 370 bp |
GC Content | 54.5% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | DF |
Subcluster | DF3 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | Small, pinprick sized plaques. Clear appearance. |
Morphotype | Siphoviridae |
Number of Genes | 102 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KX557281 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
SEA Lysate Titer |
1.3216x10^8 |
Date of SEA Lysate Titering |
Oct 19, 2015 |
Pitt Freezer Box# |
24 |
Pitt Freezer Box Grid# |
C4 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |