Gordonia phage Katyusha
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Detailed Information for Phage Katyusha
Discovery Information
Isolation HostGordonia terrae 3612
Found ByPhilipp Koman
Year Found2015
Location FoundOakland, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature30°C
GPS Coordinates40.442674 N, 79.957008 W Map
Discovery NotesFound in soil outside of Litchfield Towers Residence Halls at the University of Pittsburgh in a flower bed. Soil was kept in a plastic Zip-Lock bag for 20 minutes prior to being used for a direct plate. Soil was moist, fluffy, and fertile. Weather was warm (20-24 degrees Celsius) and humid.
Naming NotesMy moms name is Katerina and she is a biologist. My family is Russian so Katya is short for Katerina and Katyusha is the familiar of Katya. I thought my mom would be happy that my first step in the field of biology would be in her honor.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 16, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1419
Genome length (bp)75380
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length1172 bp
GC Content59.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS4
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesPlaques were quite numerous and very small, about 1mm diameter. Sizes ranged from about .5mm to 1.5mm. Some contamination was present on the plate, but not enough to make the plate unusable.
Number of Genes99
Has been Phamerated?Yes
Gene List

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Katyusha_1

Katyusha_2

Katyusha_3
(DNA-binding domain protein)

Katyusha_4

Katyusha_5

Katyusha_6

Katyusha_7

Katyusha_8
(DNA primase)

Katyusha_9
(terminase small subunit)

Katyusha_10
(terminase large subunit)

Katyusha_11

Katyusha_12
(structural protein)

Katyusha_13

Katyusha_14
(capsid maturation protease)

Katyusha_15
(scaffolding protein)

Katyusha_16
(major capsid protein)

Katyusha_17
(head-to-tail connector protein)

Katyusha_18
(head-to-tail connector protein)

Katyusha_19
(head-to-tail connector protein)

Katyusha_20
(head-to-tail connector protein)

Katyusha_21
(head-to-tail connector protein)

Katyusha_22
(head-to-tail connector protein)

Katyusha_23
(major tail protein)

Katyusha_24
(tail assembly chaperone)

Katyusha_25
(tail assembly chaperone)

Katyusha_26
(tape measure protein)

Katyusha_27
(minor tail protein)

Katyusha_28
(minor tail protein)

Katyusha_29
(minor tail protein)

Katyusha_30

Katyusha_31
(membrane protein)

Katyusha_32

Katyusha_33
(lysin A)

Katyusha_34
(lysin A)

Katyusha_35
(membrane protein)

Katyusha_36
(membrane domain protein)

Katyusha_37
(membrane domain protein)

Katyusha_38
(nuclease/helicase)

Katyusha_39
(WhiB family transcription factor)

Katyusha_40

Katyusha_41

Katyusha_42
(DNA methylase)

Katyusha_43

Katyusha_44
(lysin B)

Katyusha_45
(nucleotide pyrophosphohydrolase)

Katyusha_46

Katyusha_47
(resolvase)

Katyusha_48

Katyusha_49

Katyusha_50
(DNA polymerase III beta subunit)

Katyusha_51

Katyusha_52
(exonuclease)

Katyusha_53
(HTH DNA-binding domain protein)

Katyusha_54

Katyusha_55

Katyusha_56

Katyusha_57
(DNA helicase)

Katyusha_58

Katyusha_59

Katyusha_60

Katyusha_61

Katyusha_62

Katyusha_63

Katyusha_64

Katyusha_65

Katyusha_66

Katyusha_99

Katyusha_67

Katyusha_68

Katyusha_69

Katyusha_70

Katyusha_71

Katyusha_72

Katyusha_73

Katyusha_74

Katyusha_75

Katyusha_76
(HNH endonuclease)

Katyusha_77

Katyusha_78

Katyusha_79

Katyusha_80

Katyusha_81

Katyusha_82

Katyusha_83

Katyusha_84
(AAA-ATPase)

Katyusha_85

Katyusha_86

Katyusha_87

Katyusha_88

Katyusha_89

Katyusha_90

Katyusha_91

Katyusha_92

Katyusha_93

Katyusha_94

Katyusha_95

Katyusha_96

Katyusha_97

Katyusha_98

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU963258
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 2
Pitt Freezer Box Grid# F8
Available Files
Plaque PictureDownload
Final DNAMaster FileDownload