Mycobacterium phage Koguma
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Detailed Information for Phage Koguma
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByTeam Phager Danger
Year Found2013
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Yes
Isolation Temperature35°C
GPS Coordinates34.0869 N, 118.443 W Map
Discovery NotesPhage isolation performed in Fall 2013 by Team Phager Danger: Joel Alexander Barnett, Maria Priscila M. Gugol, Haley Michelle Hill, and Leon Yamamoto. Annotation performed in Spring 2014 by Teams Phager Danger, Breakphage Club and Scarphage. Annotation quality checked by Chaya Patel and Andrew Lund. TA: Khristina Ipapo. Instructor: Jordan Moberg Parker. DNA preparation performed by Krisanavane Reddi. Assembly performed by William Villella (UCLA).

Soil sample collection from ULCA's Boelter Hall Courtyard on October 2, 2013 was performed by Christine Tran.
Naming NotesKoguma means "little bear" in Japanese.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 10, 2014
Sequencing FacilityThe UCLA Genotyping and Sequencing Core
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage50
Genome length (bp)155759
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

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Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Plaque NotesClear plaques, 1.5-2 mm in diameter.
MorphotypeMyoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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Koguma_1

Koguma_2
(membrane domain protein)

Koguma_3
(nucleotidyl transferase)

Koguma_4

Koguma_5

Koguma_6

Koguma_7

Koguma_8

Koguma_9

Koguma_10

Koguma_11

Koguma_12

Koguma_13

Koguma_14

Koguma_15

Koguma_16

Koguma_17

Koguma_18
(membrane domain protein)

Koguma_19

Koguma_20

Koguma_21

Koguma_22

Koguma_23

Koguma_24

Koguma_25
(membrane protein, Band-7 -like)

Koguma_26

Koguma_27
(helix-turn-helix DNA binding domain)

Koguma_28

Koguma_29

Koguma_30

Koguma_31

Koguma_32

Koguma_33

Koguma_34

Koguma_35

Koguma_36

Koguma_37

Koguma_38

Koguma_39

Koguma_40

Koguma_41
(helix-turn-helix DNA binding domain)

Koguma_42
(helix-turn-helix DNA binding domain)

Koguma_43
(helix-turn-helix DNA binding domain)

Koguma_44

Koguma_45

Koguma_46

Koguma_47

Koguma_48

Koguma_49

Koguma_50

Koguma_51

Koguma_52
(helix-turn-helix DNA binding domain)

Koguma_53

Koguma_54

Koguma_55

Koguma_56

Koguma_57

Koguma_58

Koguma_59
(Helix-turn-helix DNA binding domain)

Koguma_60
(helix-turn-helix DNA binding domain)

Koguma_61

Koguma_62

Koguma_63

Koguma_64

Koguma_65

Koguma_66

Koguma_67

Koguma_68

Koguma_69

Koguma_70

Koguma_71

Koguma_72

Koguma_73

Koguma_74

Koguma_75

Koguma_76

Koguma_77

Koguma_78

Koguma_79

Koguma_84

Koguma_85

Koguma_86
(portal protein)

Koguma_87

Koguma_88

Koguma_89
(ThyX thymidylate synthase)

Koguma_90

Koguma_91
(RNA ligase)

Koguma_92
(HNH endonuclease)

Koguma_93
(endolysin, LysM-like)

Koguma_94

Koguma_95

Koguma_96
(major capsid protein)

Koguma_97
(endonuclease)

Koguma_98

Koguma_99

Koguma_100

Koguma_101

Koguma_102

Koguma_103

Koguma_104

Koguma_105
(membrane protein)

Koguma_106

Koguma_107

Koguma_108

Koguma_109

Koguma_110

Koguma_111

Koguma_112
(capsid decoration protein)

Koguma_113

Koguma_114

Koguma_115

Koguma_116

Koguma_117

Koguma_118

Koguma_119

Koguma_120

Koguma_121

Koguma_122

Koguma_123

Koguma_124
(tail sheath protein)

Koguma_125

Koguma_126

Koguma_127
(tail assembly chaperone)

Koguma_128
(tail assembly chaperone)

Koguma_129
(tape measure protein)

Koguma_130

Koguma_131

Koguma_132

Koguma_133
(minor tail protein)

Koguma_134

Koguma_135
(minor tail protein)

Koguma_136
(minor tail protein)

Koguma_137
(baseplate J protein)

Koguma_138
(HNH endonuclease)

Koguma_139
(HNH endonuclease)

Koguma_140
(HNH endonuclease)

Koguma_141
(membrane domain protein)

Koguma_142

Koguma_143
(minor tail protein)

Koguma_144

Koguma_145

Koguma_146

Koguma_147

Koguma_148

Koguma_149

Koguma_150

Koguma_154

Koguma_155
(peptidyl tRNA hydrolase)

Koguma_171
(minor tail protein, D-ala-D-ala carboxypeptidase)

Koguma_172

Koguma_185

Koguma_186
(DNA helicase)

Koguma_187

Koguma_188

Koguma_189

Koguma_190

Koguma_191

Koguma_192

Koguma_193

Koguma_194

Koguma_195

Koguma_196
(thymidylate kinase)

Koguma_197
(aminotransferase)

Koguma_198

Koguma_199

Koguma_200

Koguma_201
(DnaC helicase loader)

Koguma_202
(DnaB dsDNA helicase)

Koguma_203

Koguma_204
(DNA Primase)

Koguma_205

Koguma_206
(Chaperonin, DNAJ-like)

Koguma_207

Koguma_208
(DnaE DNA polymerase III alpha)

Koguma_209
(RF-1 peptide chain release factor)

Koguma_210
(recA DNA recombinase)

Koguma_211
(Holliday junction resolvase)

Koguma_212

Koguma_213
(HNH endonuclease)

Koguma_214
(RusA Resolvase (endonuclease))

Koguma_215

Koguma_216

Koguma_217

Koguma_218

Koguma_219

Koguma_220

Koguma_221

Koguma_224

Koguma_225

Koguma_226

Koguma_227

Koguma_228

Koguma_229

Koguma_230

Koguma_231

Koguma_232
(Ro RNA binding protein)

Koguma_233

Koguma_234

Koguma_235

Koguma_236

Koguma_237

Koguma_238

Koguma_239
(glycosyltransferase)

Koguma_240
(membrane protein)

Koguma_241
(glycosyltransferase)

Koguma_242
(galactosyltransferase)

Koguma_243
(nicotinamide riboside transport protein)

Koguma_244
(glycosyltransferase)

Koguma_245
(capsid decoration protein)

Koguma_246

Koguma_247

Koguma_248

Koguma_249
(lysin A)

Koguma_250
(holin)

Koguma_251
(lysin B)

Koguma_252
(terminase)

Koguma_253

Koguma_254

Koguma_255

Koguma_256

Koguma_257
(polynucleotide kinase)

Koguma_258

Koguma_259

Koguma_260
(serine/threonine kinase)

Koguma_261
(HNH endonuclease)

Koguma_262

Koguma_263
(adenylosuccinate synthetase, PurA-like)

Koguma_264

Koguma_265

Koguma_266

Koguma_267

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF919513
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload