Mycobacterium phage Koguma
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Koguma
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByTeam Phager Danger
Year Found2013
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Yes
Isolation Temperature35°C
GPS Coordinates34.0869 N, 118.443 W Map
Discovery NotesPhage isolation performed in Fall 2013 by Team Phager Danger: Joel Alexander Barnett, Maria Priscila M. Gugol, Haley Michelle Hill, and Leon Yamamoto. Annotation performed in Spring 2014 by Teams Phager Danger, Breakphage Club and Scarphage. Annotation quality checked by Chaya Patel and Andrew Lund. TA: Khristina Ipapo. Instructor: Jordan Moberg Parker. DNA preparation performed by Krisanavane Reddi. Assembly performed by William Villella (UCLA).

Soil sample collection from ULCA's Boelter Hall Courtyard on October 2, 2013 was performed by Christine Tran.
Naming NotesKoguma means "little bear" in Japanese.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 10, 2014
Sequencing FacilityThe UCLA Genotyping and Sequencing Core
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage50
Genome length (bp)155759
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

Click to View

Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Pier (C1)

Pio (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Plaque NotesClear plaques, 1.5-2 mm in diameter.
MorphotypeMyoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

Koguma_1

Koguma_2

Koguma_3

Koguma_4

Koguma_5

Koguma_6

Koguma_7

Koguma_8

Koguma_9

Koguma_10

Koguma_11

Koguma_12

Koguma_13

Koguma_14

Koguma_15

Koguma_16

Koguma_17

Koguma_18

Koguma_19

Koguma_20

Koguma_21

Koguma_22

Koguma_23

Koguma_24

Koguma_25

Koguma_26

Koguma_27

Koguma_28

Koguma_29

Koguma_30

Koguma_31

Koguma_32

Koguma_33

Koguma_34

Koguma_35

Koguma_36

Koguma_37

Koguma_38

Koguma_39

Koguma_40

Koguma_41

Koguma_42

Koguma_43

Koguma_44

Koguma_45

Koguma_46

Koguma_47

Koguma_48

Koguma_49

Koguma_50

Koguma_51

Koguma_52

Koguma_53

Koguma_54

Koguma_55

Koguma_56

Koguma_57

Koguma_58

Koguma_59

Koguma_60

Koguma_61

Koguma_62

Koguma_63

Koguma_64

Koguma_65

Koguma_66

Koguma_67

Koguma_68

Koguma_69

Koguma_70

Koguma_71

Koguma_72

Koguma_73

Koguma_74

Koguma_75

Koguma_76

Koguma_77

Koguma_78

Koguma_82

Koguma_83

Koguma_84

Koguma_85

Koguma_86

Koguma_87

Koguma_88

Koguma_89

Koguma_90

Koguma_91

Koguma_92

Koguma_93

Koguma_94

Koguma_95

Koguma_96

Koguma_97

Koguma_98

Koguma_99

Koguma_100

Koguma_101

Koguma_102

Koguma_103

Koguma_104

Koguma_105

Koguma_106

Koguma_107

Koguma_108

Koguma_109

Koguma_110

Koguma_111

Koguma_112

Koguma_113

Koguma_114

Koguma_115

Koguma_116

Koguma_117

Koguma_118

Koguma_119

Koguma_120

Koguma_121

Koguma_122

Koguma_123

Koguma_124

Koguma_125

Koguma_126

Koguma_127

Koguma_128

Koguma_129

Koguma_130

Koguma_131

Koguma_132

Koguma_133

Koguma_134

Koguma_135

Koguma_136

Koguma_137

Koguma_138

Koguma_139

Koguma_140

Koguma_141

Koguma_142

Koguma_143

Koguma_144

Koguma_145

Koguma_146

Koguma_147

Koguma_148

Koguma_150

Koguma_151

Koguma_158

Koguma_167

Koguma_168

Koguma_169

Koguma_180

Koguma_181

Koguma_182

Koguma_183

Koguma_184

Koguma_185

Koguma_186

Koguma_187

Koguma_188

Koguma_189

Koguma_190

Koguma_191

Koguma_192

Koguma_193

Koguma_194

Koguma_195

Koguma_196

Koguma_197

Koguma_198

Koguma_199

Koguma_200

Koguma_201

Koguma_202

Koguma_203

Koguma_204

Koguma_205

Koguma_206

Koguma_207

Koguma_208

Koguma_209

Koguma_210

Koguma_211

Koguma_212

Koguma_213

Koguma_214

Koguma_215

Koguma_216

Koguma_219

Koguma_220

Koguma_221

Koguma_222

Koguma_223

Koguma_224

Koguma_225

Koguma_226

Koguma_227

Koguma_228

Koguma_229

Koguma_230

Koguma_231

Koguma_232

Koguma_233

Koguma_234

Koguma_235

Koguma_236

Koguma_237

Koguma_238

Koguma_239

Koguma_240

Koguma_241

Koguma_242

Koguma_243

Koguma_244

Koguma_245

Koguma_246

Koguma_247

Koguma_248

Koguma_249

Koguma_250

Koguma_251

Koguma_252

Koguma_253

Koguma_254

Koguma_255

Koguma_256

Koguma_257

Koguma_258

Koguma_259

Koguma_260

Koguma_261

Koguma_262

Koguma_263

Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload