Propionibacterium phage LilBandit
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Detailed Information for Phage LilBandit
Discovery Information
Isolation HostPropionibacterium acnes ATCC 6919
Found ByTeams Lytic Squad and Unphaged
Year Found2015
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature37°C
GPS CoordinatesUnavailable
Discovery NotesMicrocomedones (blackheads) were extracted from the nose of Nancy Quintanilla using a Biore Pore Strip on April 3rd, 2015. The skin was unwashed and oily. Sample was enriched in RCM media with P. acnes strain ATCC 6919 under anaerobic conditions at 37C. Phage LilBandit was isolated, characterized, and annotated by Team The Lytic Squad (Kimberly Virgen, Benni Vargas, Nancy Quintanilla, Noor Jabaieh) and Team Unphaged (Asit Dave, Ewha Hong, Nick Rice, David Shabsovich). TA: Rocky Ng, Instructor: Jordan Moberg Parker, Laboratory Support: Krisanavane Reddi.
Naming NotesVery small and hard to catch!
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 11, 2015
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage5622
Genome length (bp)29041
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTCGTACGGCTT
GC Content54.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBU
Subcluster--
Other Cluster Members
Plaque NotesLilBandit generally produces small clear plaques, although some plaques can be much larger. LilBandit was repeatedly purified through plaque assays, and it is believed that the mixed morphologies is a characteristic of the phage.
MorphotypeSiphoviridae
Final annotation complete?No
Number of Genes45
Has been Phamerated?Yes
Gene List
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF919516
Refseq NumberNone yet
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload