Mycobacterium phage Littleton
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Detailed Information for Phage Littleton
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByTom Curley
Year Found2011
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesSoil in the park
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 24, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage388
Sanger Finishing Reactions16
Genome length (bp)155800
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

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Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Plaque NotesSmall in plaque size, circular plaques
MorphotypeMyoviridae
Final annotation complete?Yes
Number of Genes235
Number of tRNAs35
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

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Littleton_1

Littleton_2

Littleton_3

Littleton_4

Littleton_5

Littleton_6

Littleton_7

Littleton_8

Littleton_9

Littleton_10

Littleton_11

Littleton_12

Littleton_13

Littleton_14

Littleton_15

Littleton_16

Littleton_17

Littleton_18
(histidine triad protein)

Littleton_19

Littleton_20

Littleton_21

Littleton_22

Littleton_23

Littleton_24

Littleton_25
(HNH endonuclease)

Littleton_26

Littleton_27

Littleton_28

Littleton_29

Littleton_30

Littleton_31

Littleton_32

Littleton_33

Littleton_34

Littleton_35

Littleton_36

Littleton_37

Littleton_38

Littleton_39

Littleton_40

Littleton_41

Littleton_42

Littleton_43

Littleton_44

Littleton_45

Littleton_46

Littleton_47

Littleton_48

Littleton_49

Littleton_50

Littleton_51

Littleton_52

Littleton_53

Littleton_54

Littleton_55

Littleton_56

Littleton_57

Littleton_58

Littleton_59

Littleton_60

Littleton_61

Littleton_62
(HTH DNA binding domain)

Littleton_63

Littleton_64

Littleton_65

Littleton_66

Littleton_67

Littleton_68

Littleton_69

Littleton_70

Littleton_71

Littleton_72

Littleton_73

Littleton_74

Littleton_75

Littleton_76

Littleton_77

Littleton_78

Littleton_79

Littleton_80

Littleton_81

Littleton_82

Littleton_83

Littleton_88

Littleton_89

Littleton_90
(portal)

Littleton_91

Littleton_92

Littleton_93
(ThyX thymidylate synthase)

Littleton_94

Littleton_95

Littleton_96
(endolysin, LysM-like)

Littleton_97

Littleton_98

Littleton_99

Littleton_100
(zinc-finger DNA binding domain)

Littleton_101

Littleton_102

Littleton_103

Littleton_104

Littleton_105

Littleton_106

Littleton_107

Littleton_108
(membrane protein)

Littleton_109

Littleton_110

Littleton_111

Littleton_112

Littleton_113

Littleton_114

Littleton_115
(capsid decoration protein)

Littleton_116

Littleton_117
(minor tail)

Littleton_118

Littleton_119

Littleton_120

Littleton_121

Littleton_122

Littleton_123

Littleton_124

Littleton_125

Littleton_126

Littleton_127
(tail sheath protein)

Littleton_128

Littleton_129

Littleton_130
(tail assembly chaperone)

Littleton_131
(tail assembly chaperone)

Littleton_132
(tape measure)

Littleton_133

Littleton_134

Littleton_135

Littleton_136
(minor tail)

Littleton_137

Littleton_138

Littleton_139
(baseplate assembly protein)

Littleton_140
(baseplate J protein)

Littleton_141
(HNH endonuclease)

Littleton_142

Littleton_143

Littleton_144
(baseplate I protein)

Littleton_145
(minor tail)

Littleton_146

Littleton_147

Littleton_148

Littleton_149

Littleton_150

Littleton_151

Littleton_152

Littleton_153

Littleton_154

Littleton_158

Littleton_159
(peptidyl-tRNA hydrolase)

Littleton_173

Littleton_175
(D-Ala D-Ala carboxypeptidase)

Littleton_176

Littleton_189

Littleton_190

Littleton_191

Littleton_192

Littleton_193

Littleton_194

Littleton_195

Littleton_196

Littleton_197

Littleton_198

Littleton_199

Littleton_200

Littleton_201
(aminotransferase)

Littleton_202

Littleton_203

Littleton_204

Littleton_205
(DnaC helicase loader)

Littleton_206
(DNA helicase)

Littleton_207

Littleton_208
(DNA primase)

Littleton_209

Littleton_210
(Chaperonin, DnaJ-like)

Littleton_211

Littleton_212
(DNA polymerase III alpha subunit)

Littleton_213
(RF-1 peptide chain release factor)

Littleton_214
(RecA lDNA recombinase)

Littleton_215

Littleton_216

Littleton_217
(homing endonuclease)

Littleton_218
(RusA resolvase (endonuclease))

Littleton_219

Littleton_220
(RNA polymerase)

Littleton_221

Littleton_222

Littleton_223

Littleton_224

Littleton_225

Littleton_228

Littleton_229

Littleton_230

Littleton_231

Littleton_232

Littleton_233

Littleton_234

Littleton_235

Littleton_236
(Ro RNA binding protein)

Littleton_237

Littleton_238

Littleton_239

Littleton_240

Littleton_241

Littleton_242

Littleton_243

Littleton_244
(glyosyl transferase)

Littleton_245

Littleton_246
(glycosyltransferase)

Littleton_247
(galactosyl transferase)

Littleton_248

Littleton_249
(glycosyltransferase)

Littleton_250
(head decoration protein)

Littleton_251

Littleton_252

Littleton_253

Littleton_254
(lysin A)

Littleton_255
(holin)

Littleton_256
(lysin B)

Littleton_257
(terminase)

Littleton_258

Littleton_259
(polynucleotide kinase)

Littleton_260

Littleton_261

Littleton_262

Littleton_263

Littleton_264
(serine/threonine kinase)

Littleton_265

Littleton_266

Littleton_267
(adenylosuccinate synthetase, PurA like)

Littleton_268

Littleton_269

Littleton_270

Littleton_271

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKX369583
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload