Gordonia phage Lysidious
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Detailed Information for Phage Lysidious
Discovery Information
Isolation HostGordonia terrae 3612
Found ByMackenzie Bender
Year Found2016
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.433333 N, 79.95 W Map
Discovery NotesFound on 1/25/16 in plant bed near snow.
Naming NotesAfter lysate, which I spent a lot of time collecting lysate.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 22, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage874
Genome length (bp)50948
Character of genome endsUnknown
Overhang Length10 bases
Overhang SequenceTCTCCGGTGA
GC Content67.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCV
Subcluster--
Other Cluster Members
Plaque NotesSmall, circular
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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Lysidious_1
(terminase, small subunit)

Lysidious_2
(terminase, large subunit)

Lysidious_3
(portal protein)

Lysidious_4
(capsid maturation protease)

Lysidious_5
(scaffolding protein)

Lysidious_6
(major capsid protein)

Lysidious_7
(head-to-tail connector protein)

Lysidious_8
(head-to-tail connector protein)

Lysidious_9
(head-to-tail connector protein)

Lysidious_10

Lysidious_11
(head-to-tail connector protein)

Lysidious_12
(head-to-tail connector protein)

Lysidious_13
(head-to-tail connector protein)

Lysidious_14
(major tail protein)

Lysidious_15
(tail assembly chaperone)

Lysidious_16
(tail assembly chaperone)

Lysidious_17
(HNH Endonuclease)

Lysidious_18
(tape measure protein)

Lysidious_19
(minor tail protein)

Lysidious_20
(minor tail protein)

Lysidious_21
(lysin A)

Lysidious_22
(lysin A)

Lysidious_23
(membrane protein)

Lysidious_24
(membrane protein)

Lysidious_25
(membrane protein)

Lysidious_26
(lysin B)

Lysidious_27

Lysidious_28
(minor tail protein)

Lysidious_29
(minor tail protein)

Lysidious_30

Lysidious_31
(minor tail protein)

Lysidious_32

Lysidious_33

Lysidious_34

Lysidious_35

Lysidious_36

Lysidious_37

Lysidious_38
(integrase)

Lysidious_39

Lysidious_40

Lysidious_41

Lysidious_42
(helix-turn-helix DNA binding domain)

Lysidious_43

Lysidious_44
(antirepressor)

Lysidious_45

Lysidious_46

Lysidious_47

Lysidious_48

Lysidious_49

Lysidious_50

Lysidious_51

Lysidious_52
(helix-turn-helix DNA binding domain protein)

Lysidious_53

Lysidious_54

Lysidious_55

Lysidious_56

Lysidious_57

Lysidious_58
(DnaQ exonuclease (DNA polymerase III subunit))

Lysidious_59
(RecE exonuclease)

Lysidious_60
(HNH endonuclease)

Lysidious_61
(RecT ssDNA binding protein)

Lysidious_62

Lysidious_63

Lysidious_64

Lysidious_65

Lysidious_66

Lysidious_67
(nucleotidyltransferase)

Lysidious_68

Lysidious_69

Lysidious_70

Lysidious_71

Lysidious_72
(HNH endonuclease)

Lysidious_73

Lysidious_74

Lysidious_75

Lysidious_76
(resolvase, Ruv-C like)

Lysidious_77

Lysidious_78

Lysidious_79

Lysidious_80

Lysidious_81

Lysidious_82

Lysidious_83
(HNH Endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF919521
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload