The Actinobacteriophage Database | Phage MkaliMitinis3

Mycobacterium phage MkaliMitinis3

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Detailed Information for Phage MkaliMitinis3
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Gretchen Peppers
Year Found	2011
Location Found	New Orleans, LA USA
Finding Institution	Xavier University of Louisiana
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	29.99025 N, 90.097778 W Map
Discovery Notes	Tree roots submerged in the soil; Moderately moist soil; 77°F, Partly Sunny, No Clouds.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jun 21, 2012
Sequencing Facility	Virginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method	454 Pyrosequencing
Genome length (bp)	75844
Character of genome ends	3' Sticky Overhang
Overhang Length	10 bases
Overhang Sequence	TCGATCAGCC
GC Content	58.9%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	L
Subcluster	L2
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View Acquire49 (L1) Appletree2 (L1) AvadaKedavra (L1) Calm (L1) CicholasNage (L1) DirkDirk (L1) Enceladus (L1) Halena (L1) JoeDirt (L1) LeBron (L1) MAckerman (L1) OhShagHennessy (L1) Rose5 (L1) Silverleaf (L1) Tyson (L1) UPIE (L1) Wamburgrxpress (L1) Wyatt2 (L1) Zaria (L1) Archie (L2) Baoshan (L2) Bazzle (L2) BigCheese (L2) BobsGarage (L2) Breezona (L2) Claus (L2) Crossroads (L2) DrSeegs (L2) Faith1 (L2) Finemlucis (L2) Gabriela (L2) Gardann (L2) GuuelaD (L2) Hafay (L2) Itos (L2) Kahlid (L2) Lewan (L2) LilDestine (L2) Loadrie (L2) Miley16 (L2) MkaliMitinis3 (L2) Netyap (L2) Nicholasp3 (L2) Rumpelstiltskin (L2) Tourach (L2) Vetrix (L2) Wigglewiggle (L2) Wilder (L2) Winky (L2) Zakai (L2) ZhongYanYuan (L2) Bellis (L3) Clautastrophe (L3) DuncansLeg (L3) Ellson (L3) Finnry (L3) Jobypre (L3) Jubie (L3) Kingsolomon (L3) Krypton555 (L3) Lolly9 (L3) Lumos (L3) MiniLon (L3) MiniMac (L3) Moostard (L3) MsGreen (L3) Nicholas (L3) Samty (L3) Snenia (L3) Whirlwind (L3) Bromden (L4) Chaser (L4) Douge (L4) DyoEdafos (L4) Aegeus (L5) Baudelaire (L5)
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	0.8 mm in Diameter; Little to no turbidity; No variation
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Gene List	Click to View MkaliMitinis3_1 MkaliMitinis3_2 (terminase small subunit) MkaliMitinis3_3 MkaliMitinis3_4 (terminase large subunit) MkaliMitinis3_5 (portal protein) MkaliMitinis3_6 (MuF-like minor capsid protein) MkaliMitinis3_7 (scaffolding protein) MkaliMitinis3_8 (major capsid protein) MkaliMitinis3_9 (head-to-tail adaptor) MkaliMitinis3_10 (head-to-tail stopper) MkaliMitinis3_11 MkaliMitinis3_12 (tail terminator) MkaliMitinis3_13 (major tail protein) MkaliMitinis3_14 (tail assembly chaperone) MkaliMitinis3_15 (tail assembly chaperone) MkaliMitinis3_16 (tape measure protein) MkaliMitinis3_17 (minor tail protein) MkaliMitinis3_18 (minor tail protein) MkaliMitinis3_19 (minor tail protein) MkaliMitinis3_20 (minor tail protein) MkaliMitinis3_21 (minor tail protein) MkaliMitinis3_22 (minor tail protein) MkaliMitinis3_23 MkaliMitinis3_24 (minor tail protein) MkaliMitinis3_25 MkaliMitinis3_26 MkaliMitinis3_27 (lysin A) MkaliMitinis3_28 (lysin B) MkaliMitinis3_29 MkaliMitinis3_30 MkaliMitinis3_31 MkaliMitinis3_32 (NrdH-like glutaredoxin) MkaliMitinis3_33 MkaliMitinis3_34 MkaliMitinis3_35 (nucleotidyl transferase) MkaliMitinis3_36 (Lsr2-like DNA bridging protein) MkaliMitinis3_37 MkaliMitinis3_38 (tyrosine integrase) MkaliMitinis3_39 MkaliMitinis3_40 (immunity repressor) MkaliMitinis3_41 (Cro protein) MkaliMitinis3_42 (excise) MkaliMitinis3_43 MkaliMitinis3_44 MkaliMitinis3_45 MkaliMitinis3_46 MkaliMitinis3_47 (esterase) MkaliMitinis3_48 MkaliMitinis3_49 MkaliMitinis3_50 MkaliMitinis3_51 MkaliMitinis3_52 MkaliMitinis3_53 MkaliMitinis3_54 MkaliMitinis3_55 MkaliMitinis3_56 (Ro-like RNA binding protein) MkaliMitinis3_57 MkaliMitinis3_58 MkaliMitinis3_59 MkaliMitinis3_60 MkaliMitinis3_61 MkaliMitinis3_62 MkaliMitinis3_63 MkaliMitinis3_64 (ssDNA binding protein, ERF family) MkaliMitinis3_65 MkaliMitinis3_66 MkaliMitinis3_67 MkaliMitinis3_68 (HNH endonuclease) MkaliMitinis3_69 MkaliMitinis3_70 MkaliMitinis3_71 (DnaB-like dsDNA helicase) MkaliMitinis3_72 (WhiB family transcription factor) MkaliMitinis3_73 MkaliMitinis3_74 MkaliMitinis3_75 (phosphoribosyl pyrophosphate transferase) MkaliMitinis3_76 (nicotinate ribosyltransferase) MkaliMitinis3_77 (polynucleotide kinase) MkaliMitinis3_78 MkaliMitinis3_79 MkaliMitinis3_80 MkaliMitinis3_81 (RusA-like resolvase) MkaliMitinis3_82 (WhiB family transcription factor) MkaliMitinis3_83 (WhiB family transcription factor) MkaliMitinis3_84 MkaliMitinis3_85 MkaliMitinis3_86 (ssDNA binding protein) MkaliMitinis3_87 MkaliMitinis3_88 MkaliMitinis3_89 MkaliMitinis3_90 (RNA ligase) MkaliMitinis3_91 MkaliMitinis3_92 (ClpP-like protease) MkaliMitinis3_93 MkaliMitinis3_94 MkaliMitinis3_95 MkaliMitinis3_96 MkaliMitinis3_97 (HNH endonuclease) MkaliMitinis3_98 MkaliMitinis3_99 MkaliMitinis3_100 (DnaQ-like DNA polymerase III subunit) MkaliMitinis3_101 MkaliMitinis3_102 (HNH endonuclease) MkaliMitinis3_103 MkaliMitinis3_104 MkaliMitinis3_105 MkaliMitinis3_106 MkaliMitinis3_107 MkaliMitinis3_109 MkaliMitinis3_110 MkaliMitinis3_113 MkaliMitinis3_120 MkaliMitinis3_121 MkaliMitinis3_123 MkaliMitinis3_125 MkaliMitinis3_127 MkaliMitinis3_128 MkaliMitinis3_129 MkaliMitinis3_130 MkaliMitinis3_131 MkaliMitinis3_132 MkaliMitinis3_133 MkaliMitinis3_134 MkaliMitinis3_135 MkaliMitinis3_136 MkaliMitinis3_137 MkaliMitinis3_138 MkaliMitinis3_139 MkaliMitinis3_140 (AAA-ATPase) MkaliMitinis3_141 MkaliMitinis3_142 MkaliMitinis3_143 MkaliMitinis3_144
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KU234099
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
SEA Designator	XUVA
Pitt Freezer Box#	31
Pitt Freezer Box Grid#	24
Available Files
EM Picture	Download
Final DNAMaster File	Download

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