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Streptomyces phage Nishikigoi
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Detailed Information for Phage Nishikigoi
Discovery Information
Isolation HostStreptomyces xanthochromogenes NRRL B-5410
Found ByKhoi Tran
Year Found2016
Location FoundCarrollton, TX United States of America
Finding InstitutionUniversity of North Texas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates32.99963 N, 96.894871 W Map
Discovery NotesCollected from my friend's backyard.
My friend is also my lab partner.
Soil was extracted on September 12, 2016.
Temperature at the time was 20 degrees Celsius
Extracted at 7:14 AM

The site of extraction was next to a concrete slab which is under a palvika plant. The site is also where grease and oil cooking oil would be deposited. The site is a shaded area and was able to stay moist.

The soil extracted was clumped into 3 clumps. It was a dark color and was damp.
Naming NotesNishikigoi is how carp or koi fish is said in Japanese. This name is homage to my own name as well as my significant other's ethnic background.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 23, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage864
Genome length (bp)50660
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGCCACGTCTT
GC Content66.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBD
SubclusterBD2
Other Cluster Members
Plaque NotesRound, circular plaques; approximately 2 mm in diameter
Final annotation complete?No
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Available Files
Plaque PictureDownload
EM PictureDownload