Gordonia phage Nymphadora
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Detailed Information for Phage Nymphadora
Discovery Information
Isolation HostGordonia terrae 3612
Duplicates of this PhageMalvern, Nymeria, Tiff5
Found ByAnastasia Pfeiffer
Year Found2015
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 12, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage650
Genome length (bp)53431
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGCTGGGGA
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ1
Other Cluster Members
Final annotation complete?Yes
Number of Genes84
Has been Phamerated?Yes
Gene List

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Nymphadora_1
(Terminase Small Subunit)

Nymphadora_2
(Terminase Large Subunit)

Nymphadora_3

Nymphadora_4
(Phage Portal Protein)

Nymphadora_5
(Capsid Maturation Protease)

Nymphadora_6
(Major Capsid Protein)

Nymphadora_7
(Head-to-Tail Connector Protein)

Nymphadora_8
(Head-to-Tail Connector Protein)

Nymphadora_9
(Head-to-Tail Connector Protein)

Nymphadora_10
(Head-to-Tail Connector Protein)

Nymphadora_11
(Head-to-Tail Connector Protein)

Nymphadora_12
(Major Tail Subunit)

Nymphadora_13

Nymphadora_14

Nymphadora_15

Nymphadora_16

Nymphadora_17
(Tape Measure Protein)

Nymphadora_18
(Minor Tail Protein)

Nymphadora_19

Nymphadora_20
(Lysin A, L-Ala-D-Glu peptidase domain)

Nymphadora_21
(Lysin A_)

Nymphadora_22
(membrane protein)

Nymphadora_23
(membrane protein)

Nymphadora_24
(membrane protein)

Nymphadora_25
(lysin B)

Nymphadora_26
(minor tail protein)

Nymphadora_27

Nymphadora_28
(minor tail Protein)

Nymphadora_29

Nymphadora_30

Nymphadora_31

Nymphadora_32

Nymphadora_33

Nymphadora_34

Nymphadora_35

Nymphadora_36

Nymphadora_37

Nymphadora_38

Nymphadora_39
(integrase (Y-int))

Nymphadora_40

Nymphadora_41

Nymphadora_42
(HipA toxin, toxin-antitoxin system?)

Nymphadora_43

Nymphadora_44
(immunity repressor)

Nymphadora_45
(CRO (Control of Repressor)

Nymphadora_46

Nymphadora_47

Nymphadora_48

Nymphadora_49

Nymphadora_50

Nymphadora_51

Nymphadora_52

Nymphadora_53

Nymphadora_54

Nymphadora_55

Nymphadora_56

Nymphadora_57

Nymphadora_58
(Exonuclease (Specify RecE / RecB / regular))

Nymphadora_59
(Exonuclease (Specify RecE / RecB / regular))

Nymphadora_60
(Phage Recombination Protein)

Nymphadora_61

Nymphadora_62

Nymphadora_63
(Molecular Chaperone DnaJ)

Nymphadora_64

Nymphadora_65

Nymphadora_66
(Site-specific DNA methylase)

Nymphadora_67
(Methyltransferase)

Nymphadora_68

Nymphadora_69

Nymphadora_70

Nymphadora_71

Nymphadora_72

Nymphadora_73

Nymphadora_74

Nymphadora_75
(Crossover junction endodeoxyribonuclease)

Nymphadora_76

Nymphadora_77

Nymphadora_78

Nymphadora_79

Nymphadora_80

Nymphadora_81

Nymphadora_82

Nymphadora_83

Nymphadora_84
(HNH Endonuclease)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU963255
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Final DNAMaster FileDownload