Gordonia phage Orchid
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Detailed Information for Phage Orchid
Discovery Information
Isolation HostGordonia terrae 3612
Found ByMatthew Montgomery
Year Found2015
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.450217 N, 79.954983 W Map
Naming NotesI named this after a Black Sabbath song.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 10, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1293
Genome length (bp)80650
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length249 bp
GC Content47.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCX
Subcluster--
Cluster Life CycleTemperate
Lysogeny NotesOrchid does not form a lysogen.
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesOrchid forms very small plaques of varying sizes.
MorphotypeSiphoviridae
Number of Genes114
Number of tRNAs1
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

Click to View

Orchid_1
(DNA primase)

Orchid_2
(HNH endonuclease)

Orchid_3
(HNH endonuclease)

Orchid_4

Orchid_5

Orchid_6

Orchid_7

Orchid_8

Orchid_9

Orchid_10
(terminase)

Orchid_11
(portal protein)

Orchid_12

Orchid_13
(capsid maturation protease)

Orchid_14
(capsid decoration protein)

Orchid_15
(major capsid protein)

Orchid_16

Orchid_17

Orchid_18

Orchid_19

Orchid_20

Orchid_21
(major tail protein)

Orchid_22
(tail assembly chaperone)

Orchid_23
(tail assembly chaperone)

Orchid_24
(tape measure protein)

Orchid_25
(minor tail protein)

Orchid_26
(minor tail protein)

Orchid_27
(minor tail protein)

Orchid_28

Orchid_29
(lysin A)

Orchid_30

Orchid_31

Orchid_32

Orchid_33

Orchid_34

Orchid_35
(minor tail protein)

Orchid_36

Orchid_37

Orchid_38
(minor tail protein)

Orchid_39
(lysin B)

Orchid_40

Orchid_41
(Cas4 family exonuclease)

Orchid_42

Orchid_43

Orchid_44

Orchid_45

Orchid_46

Orchid_47

Orchid_48
(MazG-like nucleotide pyrophosphohydrolase)

Orchid_49

Orchid_50

Orchid_51

Orchid_52
(RusA-like resolvase)

Orchid_53
(DNA polymerase III sliding clamp)

Orchid_54

Orchid_55
(DnaQ-like DNA polymerase III subunit)

Orchid_56
(helix-turn-helix DNA binding protein)

Orchid_57
(DNA helicase)

Orchid_58

Orchid_59
(ThyX-like thymidylate synthase)

Orchid_60
(HNH endonuclease)

Orchid_61

Orchid_62

Orchid_63

Orchid_64
(helix-turn-helix DNA binding protein)

Orchid_65
(DprA-like DNA processing chain A)

Orchid_66

Orchid_67

Orchid_68

Orchid_69

Orchid_70
(tyrosine integrase)

Orchid_71

Orchid_72

Orchid_73

Orchid_74

Orchid_75

Orchid_76

Orchid_77

Orchid_78

Orchid_79

Orchid_80

Orchid_81

Orchid_82

Orchid_83

Orchid_84

Orchid_85

Orchid_86
(AAA-ATPase)

Orchid_87

Orchid_88

Orchid_89

Orchid_90

Orchid_91

Orchid_92

Orchid_93

Orchid_94

Orchid_95

Orchid_96

Orchid_99

Orchid_100

Orchid_101

Orchid_102

Orchid_103

Orchid_104

Orchid_105

Orchid_106

Orchid_107

Orchid_108

Orchid_109

Orchid_110

Orchid_111

Orchid_112

Orchid_113

Orchid_114

Orchid_115

Orchid_116

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU998253
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 6
Pitt Freezer Box Grid# E9
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload