Propionibacterium phage P100A
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage P100A
Discovery Information
Isolation HostPropionibacterium acnes ATCC 6919
Found ByUnavailable
Year Found2010
Location FoundUnavailable
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesFrom a patient with no acne.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 25, 2012
Sequencing FacilityThe UCLA Genotyping and Sequencing Core
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage100
Genome length (bp)29505
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTCGTACGGCTT
GC Content53.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBU
Subcluster--
Other Cluster Members
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

P100A_1
(Original GeneMark call @bp 1; Glimmer calls start at 34)

P100A_2
(Original GeneMark call @bp 440; Glimmer calls start at 383)

P100A_3
(Original GeneMark call @bp 1891)

P100A_4
(Original GeneMark call @bp 3223)

P100A_5
(Original GeneMark call @bp 4086)

P100A_6
(Original GeneMark call @bp 4656)

P100A_7
(Original GeneMark call @bp 5648; Glimmer calls start at 5630)

P100A_8
(Original GeneMark call @bp 6111)

P100A_9
(Original GeneMark call @bp 6458)

P100A_10
(Original GeneMark call @bp 6751)

P100A_11
(Original GeneMark call @bp 7172)

P100A_12
(Original GeneMark call @bp 7823; Glimmer calls start at 7868)

P100A_13
(Original GeneMark call @bp 8218)

P100A_14
(Original GeneMark call @bp 8513)

P100A_15
(Original GeneMark call @bp 11346; Glimmer calls start at 11295)

P100A_16
(Original GeneMark call @bp 12300; Glimmer calls start at 12249)

P100A_17
(Original GeneMark call @bp 13421; Glimmer calls start at 13433)

P100A_18
(Original GeneMark call @bp 14428; Glimmer calls start at 14398)

P100A_19
(Original GeneMark call @bp 14565)

P100A_20
(Original GeneMark call @bp 15669; Glimmer calls start at 15417)

P100A_21
(Original GeneMark call @bp 16284)

P100A_22
(Original GeneMark call @bp 17310; Glimmer calls start at 17283)

P100A_23
(Original GeneMark call @bp 17680)

P100A_24
(Original GeneMark call @bp 17968)

P100A_25
(Original GeneMark call @bp 18305)

P100A_26
(Original GeneMark call @bp 19358)

P100A_27
(Original GeneMark call @bp 19540)

P100A_28
(Original GeneMark call @bp 20081)

P100A_29
(Original GeneMark call @bp 20644)

P100A_30
(Original GeneMark call @bp 21359)

P100A_31
(This gene was not called here, but is annotated in P14.4 and PA6; sequence is conserved and coding potential is there.)

P100A_32
(Original GeneMark call @bp 21916; Glimmer calls start at 21913)

P100A_33
(Original GeneMark call @bp 22776)

P100A_34
(Original GeneMark call @bp 23284; Glimmer calls start at 23389)

P100A_35
(Original GeneMark call @bp 23747)

P100A_36
(Original GeneMark call @bp 24688)

P100A_37
(Original GeneMark call @bp 25041)

P100A_38
(Original GeneMark call @bp 25150 ** not called by Glimmer)

P100A_39
(Original GeneMark call @bp 25347)

P100A_40
(Original GeneMark call @bp 25571)

P100A_41
(Original GeneMark call @bp 26178; Glimmer calls start at 26214)

P100A_42
(Original GeneMark call @bp 26559)

P100A_43
(Original GeneMark call @bp 26901)

P100A_44
(Original GeneMark call @bp 28836; Glimmer calls start at 28941)

P100A_45
(Original Glimmer call @bp 29140 has strength 8.96)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJX262221
Refseq NumberNC_018838