Propionibacterium phage P101A
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Detailed Information for Phage P101A
Discovery Information
Isolation HostPropionibacterium acnes ATCC 6919
Found ByUnavailable
Year Found2010
Location FoundUnavailable
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 25, 2012
Sequencing FacilityUC Davis Genome Center
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage30000
Genome length (bp)29574
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceTCGTACGGCTT
GC Content54.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBU
Subcluster--
Other Cluster Members
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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P101A_1
(Original GeneMark call @bp 2 ** not called by Glimmer)

P101A_2
(Original GeneMark call @bp 417 ** not called by Glimmer)

P101A_3
(Original GeneMark call @bp 1886 ** not called by Glimmer)

P101A_4
(Original GeneMark call @bp 3218 ** not called by Glimmer)

P101A_5
(Original GeneMark call @bp 4077 ** not called by Glimmer)

P101A_6
(Original GeneMark call @bp 4638; Glimmer calls start at 5058)

P101A_7
(Original GeneMark call @bp 5629 ** not called by Glimmer)

P101A_8
(Original GeneMark call @bp 6092 ** not called by Glimmer)

P101A_9
(Original GeneMark call @bp 6446 ** not called by Glimmer)

P101A_10
(Original GeneMark call @bp 6733 ** not called by Glimmer)

P101A_11
(Original GeneMark call @bp 7161 ** not called by Glimmer)

P101A_12
(Original GeneMark call @bp 7837 ** not called by Glimmer)

P101A_13
(Original GeneMark call @bp 8232 ** not called by Glimmer)

P101A_14
(Original GeneMark call @bp 8527 ** not called by Glimmer)

P101A_15
(Original GeneMark call @bp 11359; Glimmer calls start at 11308)

P101A_16
(Original GeneMark call @bp 12257 ** not called by Glimmer)

P101A_17
(Original GeneMark call @bp 13431 ** not called by Glimmer)

P101A_18
(This gene wasn t called in this one, but was called in others; sequence is conserved and coding potential is there)

P101A_19
(Original GeneMark call @bp 14557 ** not called by Glimmer)

P101A_20
(Original GeneMark call @bp 15676; Glimmer calls start at 15424)

P101A_21
(Original GeneMark call @bp 16291 ** not called by Glimmer)

P101A_22
(Original GeneMark call @bp 17300)

P101A_23
(Original GeneMark call @bp 17697)

P101A_24
(Original GeneMark call @bp 17977)

P101A_25
(Original GeneMark call @bp 18314)

P101A_26
(Original GeneMark call @bp 19371)

P101A_27
(Original GeneMark call @bp 19562)

P101A_28
(Original GeneMark call @bp 20103)

P101A_29
(Original GeneMark call @bp 20663)

P101A_30
(Original GeneMark call @bp 21378)

P101A_31
(This gene was not called here, but is annotated in P14.4 and PA6; sequence is conserved and coding potential is there.)

P101A_32
(Original Glimmer call @bp 21731 has strength 11.01)

P101A_33
(Original GeneMark call @bp 22795)

P101A_34
(Original GeneMark call @bp 23307)

P101A_35
(Original GeneMark call @bp 23755)

P101A_36
(Original GeneMark call @bp 24699)

P101A_37
(Original GeneMark call @bp 25052)

P101A_38
(Original GeneMark call @bp 25162 ** not called by Glimmer)

P101A_39
(Original GeneMark call @bp 25362)

P101A_40
(Original GeneMark call @bp 25586)

P101A_41
(Original GeneMark call @bp 26193; Glimmer calls start at 26229)

P101A_42
(Original GeneMark call @bp 26574)

P101A_43
(Original GeneMark call @bp 26913)

P101A_44
(This gene was not called but coding potential is here, and this has similiarity to putative orf gp44 in P104A, gp46 in P100D and gp45 in P105.)

P101A_45
(Original GeneMark call @bp 28760; Glimmer calls start at 28751)

P101A_46
(This gene was not called here, but orf matches a gene called in other P. acnes phages, e.g. gp47 in PA6)

P101A_47
(Original Glimmer call @bp 29210 has strength 13.85)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJX262217
Refseq NumberNC_018841