Propionibacterium phage P104A
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Detailed Information for Phage P104A
Discovery Information
Isolation HostPropionibacterium acnes ATCC 6919
Found ByUnavailable
Year Found2010
Location FoundUnavailable
Finding InstitutionUniversity of California, Los Angeles
ProgramUnavailable
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesFrom a donor with acne.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedSep 25, 2012
Sequencing FacilityUC Davis Genome Center
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage30000
Genome length (bp)29371
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTCGTACGGCTT
GC Content54.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBU
Subcluster--
Other Cluster Members
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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P104A_1
(Original GeneMark call @bp 2)

P104A_2
(Original GeneMark call @bp 417; Glimmer calls start at 378)

P104A_3
(Original GeneMark call @bp 1886)

P104A_4
(Original GeneMark call @bp 3215)

P104A_5
(Original GeneMark call @bp 4081)

P104A_6
(Original GeneMark call @bp 4636)

P104A_7
(Original GeneMark call @bp 5631)

P104A_8
(Original GeneMark call @bp 6094)

P104A_9
(Original GeneMark call @bp 6448)

P104A_10
(Original GeneMark call @bp 6735)

P104A_11
(Original GeneMark call @bp 7161; Glimmer calls start at 7149)

P104A_12
(Original GeneMark call @bp 7808)

P104A_13
(Original GeneMark call @bp 8203)

P104A_14
(Original GeneMark call @bp 8498)

P104A_15
(Original GeneMark call @bp 11402; Glimmer calls start at 11279)

P104A_16
(Original GeneMark call @bp 12285; Glimmer calls start at 12234)

P104A_17
(Original GeneMark call @bp 13397)

P104A_18
(Original GeneMark call @bp 14401; Glimmer calls start at 14371)

P104A_19
(Original Glimmer call @bp 14538 has strength 10.79)

P104A_20
(Original GeneMark call @bp 15358; Glimmer calls start at 15172)

P104A_21
(Original GeneMark call @bp 16054)

P104A_22
(Original GeneMark call @bp 17050)

P104A_23
(Original GeneMark call @bp 17453)

P104A_24
(Original GeneMark call @bp 17741)

P104A_25
(Original GeneMark call @bp 18078)

P104A_26
(Original GeneMark call @bp 19128)

P104A_27
(Original GeneMark call @bp 19319)

P104A_28
(Original GeneMark call @bp 19869)

P104A_29
(Original GeneMark call @bp 20432)

P104A_30
(Original GeneMark call @bp 21147)

P104A_31
(This gene was not called here, but is annoted in P14.4 and PA6; sequence is conserved and coding potential is there.)

P104A_32
(Original GeneMark call @bp 21704; Glimmer calls start at 21644)

P104A_33
(Original GeneMark call @bp 22564)

P104A_34
(Original GeneMark call @bp 23080)

P104A_35
(Original GeneMark call @bp 23523)

P104A_36
(Original GeneMark call @bp 24461)

P104A_37
(Original GeneMark call @bp 24814)

P104A_38
(Original GeneMark call @bp 24923 ** not called by Glimmer)

P104A_39
(Original GeneMark call @bp 25123)

P104A_40
(Original GeneMark call @bp 25347)

P104A_41
(Original GeneMark call @bp 25954; Glimmer calls start at 25990)

P104A_42
(Original GeneMark call @bp 26335)

P104A_43
(Original GeneMark call @bp 26683; Glimmer calls start at 26752)

P104A_44
(This gene was not called but coding potential is there, and this has similarity to putative orf gp44 in P101A, gp45 in P105 and gp46 in P100D.)

P104A_45
(Original Glimmer call @bp 29007 has strength 7.79)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionJX262218
Refseq NumberNC_018845