Rhodococcus phage Partridge

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Detailed Information for Phage Partridge
Discovery Information
Isolation HostRhodococcus erythropolis RIA 643
Found ByAnne Marie Hancock, Micheal Richers
Year Found2015
Location FoundMonroe, LA USA
Finding InstitutionUniversity of Louisiana at Monroe
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature35°C
GPS CoordinatesUnavailable
Discovery NotesThe soil sample was taken from under a pear tree at the base of the tree about two o'clock in the afternoon.
Naming NotesWe chose the name Partridge because the soil sample was found under a pear tree. We decided to play off the classic Christmas song, "The Twelve Days of Christmas."
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 26, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage3707
Genome length (bp)46962
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGCCGTGAT
GC Content58.8%
Sequencing Notesat position 41259 bp 45% of reads have an A instead of consensus C
Fasta file available?Available upon entering GPS coordinates
Characterization
ClusterCA
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesThe plaques produced were medium sized clear circles, appearing within eighteen hours of infection.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Partridge_1

Partridge_2

Partridge_3

Partridge_7
(lysin)

Partridge_8
(terminase)

Partridge_9
(portal protein)

Partridge_10
(capsid maturation protease)

Partridge_11
(scaffolding protein)

Partridge_12
(major capsid protein)

Partridge_13
(head-to-tail connector protein)

Partridge_14
(head-to-tail connector protein)

Partridge_15
(head-to-tail connector protein)

Partridge_16
(head-to-tail connector protein)

Partridge_17
(head-to-tail connector protein)

Partridge_18
(major tail protein)

Partridge_19
(tail assembly chaperone)

Partridge_20
(tail assembly chaperone)

Partridge_21
(tape measure protein)

Partridge_22
(minor tail protein)

Partridge_23
(minor tail protein)

Partridge_24
(minor tail protein)

Partridge_25
(holin)

Partridge_26

Partridge_27
(tail protein)

Partridge_28

Partridge_29
(integrase)

Partridge_30
(excise)

Partridge_31
(putative membrane protein)

Partridge_32
(deaminase)

Partridge_33

Partridge_34

Partridge_35

Partridge_36
(DNA polymerase I)

Partridge_37
(HTH DNA binding domain protein)

Partridge_38
(thymidylate synthase)

Partridge_39

Partridge_40
(ribonucleotide reductase)

Partridge_41

Partridge_42

Partridge_43
(phosphoesterase)

Partridge_44

Partridge_45
(glutaredoxin)

Partridge_46

Partridge_47
(DNA primase)

Partridge_48
(DNA primase)

Partridge_49

Partridge_50
(endonuclease VII)

Partridge_51

Partridge_52
(dsDNA helicase)

Partridge_53

Partridge_54

Partridge_55
(nuclease)

Partridge_56

Partridge_57
(HTH DNA binding protein)

Partridge_58

Partridge_59

Partridge_60

Partridge_61

Partridge_62

Partridge_63

Partridge_64

Partridge_65
(antirestriction protein)

Partridge_66

Partridge_67

Partridge_68

Partridge_69

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKX712237
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 22
Pitt Freezer Box Grid# H11
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload