Mycobacterium phage Phreak
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Detailed Information for Phage Phreak
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPetros Raygoza
Year Found2012
Location FoundSpokane, WA USA
Finding InstitutionGonzaga University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates47.66709, -117.40304 Map
Discovery Notesfrom a flowerbed, sunny and 80 degrees Fahrenheit
Naming NotesNamed after SF Giants pitcher Tim Lincecum, "The Freak".
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 23, 2014
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage460
Sanger Finishing Reactions8
Genome length (bp)41901
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCCCCATGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterG
SubclusterG1
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKT347314
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Available Files
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload