Mycobacterium phage Pier
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Pier
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAlia Elkhalili and Katie Zirbes
Year Found2012
Location FoundCorpus Christi, TX United States
Finding InstitutionDel Mar College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates27.764296, -97.407418 Map
Discovery Notes- The temperature was about 97 degrees fahrenheit
- The air outside was very humid.
- We went down approximately 1 centimeter to retrieve the sample.
- The sample mostly consisted of sand and sea water.
Naming Notes- The sample was named Pier because our soil was collected off of a fishing pier in Corpus Christi.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 22, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage360
Sanger Finishing Reactions14
Genome length (bp)156471
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Cluster Life CycleLytic
Other Cluster Members

Click to View

Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

Basquiat (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Bonray (C1)

Bread (C1)

Breeniome (C1)

Burrough (C1)

Bxz1 (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

Chargie21 (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Darko (C1)

Delilah (C1)

Derek (C1)

Dietrick (C1)

Doodle1 (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

Fludd (C1)

FoxtrotP1 (C1)

FrayBell (C1)

FudgeTart (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

Grungle (C1)

HarrySpotter (C1)

HyRo (C1)

InigoMontoya (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Jessibeth14 (C1)

JustHall (C1)

Kamryn (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Lionheart (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

McWolfish (C1)

Megamind (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

MrsHay (C1)

Naija (C1)

Napoleon13 (C1)

Nappy (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

OaklaforG (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phlegm (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rabinovish (C1)

Rahel (C1)

Rizal (C1)

RoMag (C1)

Roots515 (C1)

Salacia (C1)

SandySandal (C1)

Sauce (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

Shelob (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

ValleyTerrace (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zalkecks (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Annotation StatusIn GenBank
Plaque NotesThe plaques were circular and approximately 1 mm in diameter and the area was 3.14 mm. The plaques were lytic because they are very well seen.
MorphotypeMyoviridae
Has been Phamerated?Yes
Gene List

Click to View

Pier_1

Pier_2

Pier_3
(nucleotidyltransferase)

Pier_4

Pier_5

Pier_6

Pier_7

Pier_8

Pier_9

Pier_10

Pier_11

Pier_12

Pier_13

Pier_14

Pier_15

Pier_16

Pier_17

Pier_18

Pier_19

Pier_20

Pier_21

Pier_22

Pier_23

Pier_24

Pier_25

Pier_26

Pier_27
(HNH endonuclease)

Pier_28

Pier_29

Pier_30

Pier_31
(band-7 like membrane protein)

Pier_32

Pier_33

Pier_34

Pier_35

Pier_36

Pier_37

Pier_38

Pier_39

Pier_40

Pier_41

Pier_42

Pier_43

Pier_44

Pier_45

Pier_46

Pier_47

Pier_48

Pier_49

Pier_50

Pier_51

Pier_52

Pier_53

Pier_54

Pier_55

Pier_56

Pier_57

Pier_58

Pier_59

Pier_60

Pier_61

Pier_62

Pier_63

Pier_64

Pier_65
(HTH DNA binding protein)

Pier_66

Pier_67

Pier_68

Pier_69

Pier_70

Pier_71

Pier_72

Pier_73

Pier_74

Pier_75

Pier_76

Pier_77

Pier_78

Pier_79

Pier_80

Pier_81

Pier_82

Pier_83

Pier_84

Pier_85

Pier_86

Pier_87
(ParB-like nuclease domain protein)

Pier_92

Pier_93

Pier_94
(portal protein)

Pier_95

Pier_96

Pier_97
(ThyX-like thymidylate synthase)

Pier_98

Pier_99

Pier_100
(LysM domain protein)

Pier_101

Pier_102

Pier_103
(major capsid protein)

Pier_104

Pier_105

Pier_106

Pier_107

Pier_108

Pier_109

Pier_110

Pier_111

Pier_112

Pier_113

Pier_114

Pier_115

Pier_116

Pier_117

Pier_118

Pier_119

Pier_120

Pier_121

Pier_122

Pier_123

Pier_124

Pier_125

Pier_126

Pier_127

Pier_128

Pier_129

Pier_130

Pier_131
(tail sheath protein)

Pier_132

Pier_133

Pier_134
(tail assembly chaperone)

Pier_135
(tail assembly chaperone)

Pier_136
(tape measure protein)

Pier_137

Pier_138

Pier_139

Pier_140
(minor tail protein)

Pier_141

Pier_142
(minor tail protein)

Pier_143

Pier_144
(baseplate)

Pier_145

Pier_146

Pier_147

Pier_148

Pier_149
(minor tail protein)

Pier_150

Pier_151

Pier_152

Pier_153

Pier_154

Pier_155

Pier_156

Pier_160

Pier_161

Pier_176
(beta-lactamase)

Pier_177

Pier_188

Pier_189
(helicase)

Pier_190

Pier_191

Pier_192

Pier_193

Pier_194

Pier_195

Pier_196

Pier_197

Pier_198

Pier_199
(aminotransferase)

Pier_200

Pier_201

Pier_202

Pier_203
(DnaC-like helicase loader)

Pier_204
(helicase)

Pier_205

Pier_206
(DNA primase)

Pier_207

Pier_208
(DnaJ-like chaperonin)

Pier_209

Pier_210
(DNA polymerase III alpha subunit)

Pier_211
(peptide chain release factor 1)

Pier_212
(RecA-like recombinase)

Pier_213

Pier_214

Pier_215

Pier_216
(RusA-like resolvase)

Pier_217

Pier_218

Pier_219

Pier_220

Pier_221

Pier_222

Pier_223

Pier_226

Pier_227

Pier_228

Pier_229

Pier_230

Pier_231

Pier_232
(Ro-like RNA binding protein)

Pier_233

Pier_234

Pier_235

Pier_236

Pier_237

Pier_238

Pier_239
(glycosyltransferase)

Pier_240

Pier_241
(glycosyltransferase)

Pier_242
(glycosyltransferase)

Pier_243

Pier_244
(glycosyltransferase)

Pier_245

Pier_246

Pier_247

Pier_248

Pier_249
(lysin A)

Pier_250
(holin)

Pier_251
(lysin B)

Pier_252
(terminase)

Pier_253

Pier_254

Pier_255

Pier_256

Pier_257

Pier_258

Pier_259

Pier_260
(serine/threonine kinase)

Pier_261

Pier_262

Pier_263

Pier_264

Pier_265

Pier_266

Pier_267

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG812494
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
Pitt Freezer Box# 35
Pitt Freezer Box Grid# 17
Available Files
EM PictureDownload
GenBank File for PhameratorDownload