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Mycobacterium phage Pier
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Detailed Information for Phage Pier
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByAlia Elkhalili and Katie Zirbes
Year Found2012
Location FoundCorpus Christi, TX United States
Finding InstitutionDel Mar College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery Notes- The temperature was about 97 degrees fahrenheit
- The air outside was very humid.
- We went down approximately 1 centimeter to retrieve the sample.
- The sample mostly consisted of sand and sea water.
Naming Notes- The sample was named Pier because our soil was collected off of a fishing pier in Corpus Christi.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 22, 2013
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage360
Sanger Finishing Reactions14
Genome length (bp)156471
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

Click to View

Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Doodle1 (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Lionheart (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

OaklaforG (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

Salacia (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Plaque NotesThe plaques were circular and approximately 1 mm in diameter and the area was 3.14 mm. The plaques were lytic because they are very well seen.
MorphotypeMyoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

Pier_1

Pier_2

Pier_3

Pier_4

Pier_5

Pier_6

Pier_7

Pier_8

Pier_9

Pier_10

Pier_11

Pier_12

Pier_13

Pier_14

Pier_15

Pier_16

Pier_17

Pier_18

Pier_19

Pier_20

Pier_21

Pier_22

Pier_23

Pier_24

Pier_25

Pier_26

Pier_27

Pier_28

Pier_29

Pier_30

Pier_31

Pier_32

Pier_33

Pier_34

Pier_35

Pier_36

Pier_37

Pier_38

Pier_39

Pier_40

Pier_41

Pier_42

Pier_43

Pier_44

Pier_45

Pier_46

Pier_47

Pier_48

Pier_49

Pier_50

Pier_51

Pier_52

Pier_53

Pier_54

Pier_55

Pier_56

Pier_57

Pier_58

Pier_59

Pier_60

Pier_61

Pier_62

Pier_63

Pier_64

Pier_65

Pier_66

Pier_67

Pier_68

Pier_69

Pier_70

Pier_71

Pier_72

Pier_73

Pier_74

Pier_75

Pier_76

Pier_77

Pier_78

Pier_79

Pier_80

Pier_81

Pier_82

Pier_83

Pier_87

Pier_88

Pier_89

Pier_90

Pier_91

Pier_92

Pier_93

Pier_94

Pier_95

Pier_96

Pier_97

Pier_98

Pier_99

Pier_100

Pier_101

Pier_102

Pier_103

Pier_104

Pier_105

Pier_106

Pier_107

Pier_108

Pier_109

Pier_110

Pier_111

Pier_112

Pier_113

Pier_114

Pier_115

Pier_116

Pier_117

Pier_118

Pier_119

Pier_120

Pier_121

Pier_122

Pier_123

Pier_124

Pier_125

Pier_126

Pier_127

Pier_128

Pier_129

Pier_130

Pier_131

Pier_132

Pier_133

Pier_134

Pier_135

Pier_136

Pier_137

Pier_138

Pier_139

Pier_140

Pier_141

Pier_142

Pier_143

Pier_144

Pier_145

Pier_146

Pier_147

Pier_148

Pier_149

Pier_150

Pier_153

Pier_154

Pier_161

Pier_170

Pier_171

Pier_182

Pier_183

Pier_184

Pier_185

Pier_186

Pier_187

Pier_188

Pier_189

Pier_190

Pier_191

Pier_192

Pier_193

Pier_194

Pier_195

Pier_196

Pier_197

Pier_198

Pier_199

Pier_200

Pier_201

Pier_202

Pier_203

Pier_204

Pier_205

Pier_206

Pier_207

Pier_208

Pier_209

Pier_210

Pier_211

Pier_212

Pier_213

Pier_214

Pier_215

Pier_216

Pier_217

Pier_220

Pier_221

Pier_222

Pier_223

Pier_224

Pier_225

Pier_226

Pier_227

Pier_228

Pier_229

Pier_230

Pier_231

Pier_232

Pier_233

Pier_234

Pier_235

Pier_236

Pier_237

Pier_238

Pier_239

Pier_240

Pier_241

Pier_242

Pier_243

Pier_244

Pier_245

Pier_246

Pier_247

Pier_248

Pier_249

Pier_250

Pier_251

Pier_252

Pier_253

Pier_254

Pier_255

Pier_256

Pier_257

Pier_258

Pier_259

Pier_260

Pier_261

Pier_262

Pier_263

Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
EM PictureDownload