Gordonia phage Portcullis
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Detailed Information for Phage Portcullis
Discovery Information
Isolation HostGordonia terrae 3612
Found ByElizabeth Koning
Year Found2016
Location FoundGrand Rapids, MI USA
Finding InstitutionCalvin University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.933863 N, 85.591116 W Map
Discovery NotesSoil collected from under pepper plants in campus garden.
Naming NotesReference to FIRST Robotics Stronghold game (one of the defenses was the Portcullis)
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 23, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage59
Genome length (bp)58364
Character of genome endsCircularly Permuted
GC Content67.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterDC
SubclusterDC1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of North Carolina at Charlotte
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Portcullis_1
(helix-turn-helix DNA binding domain protein)

Portcullis_2

Portcullis_3

Portcullis_4

Portcullis_5
(terminase)

Portcullis_6

Portcullis_7

Portcullis_8
(helix-turn-helix DNA binding domain protein)

Portcullis_9

Portcullis_10
(hydrolase)

Portcullis_11

Portcullis_12
(portal protein)

Portcullis_13

Portcullis_14
(ADP-ribosyltransferase domain and MuF-like fusion protein)

Portcullis_15

Portcullis_16

Portcullis_17
(RNA ligase)

Portcullis_18

Portcullis_19
(major capsid hexamer protein)

Portcullis_20

Portcullis_21

Portcullis_22
(major tail protein)

Portcullis_23
(head-to-tail adaptor)

Portcullis_24

Portcullis_25

Portcullis_26

Portcullis_27
(tail assembly chaperone)

Portcullis_28

Portcullis_29
(tape measure protein)

Portcullis_30
(minor tail protein)

Portcullis_31
(minor tail protein)

Portcullis_32

Portcullis_33
(minor tail protein)

Portcullis_34

Portcullis_35

Portcullis_36
(minor tail protein)

Portcullis_37

Portcullis_38

Portcullis_39

Portcullis_40
(lysin A)

Portcullis_41
(holin)

Portcullis_42

Portcullis_43

Portcullis_44

Portcullis_45
(lysin B)

Portcullis_46

Portcullis_47
(serine integrase)

Portcullis_48

Portcullis_49
(tyrosine integrase)

Portcullis_50
(immunity repressor)

Portcullis_51
(helix-turn-helix DNA binding domain protein)

Portcullis_52

Portcullis_53

Portcullis_54

Portcullis_55
(Cas4 family exonuclease)

Portcullis_56

Portcullis_57

Portcullis_58

Portcullis_59

Portcullis_60

Portcullis_61

Portcullis_62
(helix-turn-helix DNA binding domain protein)

Portcullis_63
(helix-turn-helix DNA binding domain protein)

Portcullis_64

Portcullis_65
(RuvC-like resolvase)

Portcullis_66

Portcullis_67

Portcullis_68

Portcullis_69

Portcullis_70

Portcullis_71

Portcullis_72

Portcullis_73
(PnuC-like nicotinamide riboside transporter)

Portcullis_74

Portcullis_75

Portcullis_76

Portcullis_77

Portcullis_78

Portcullis_79

Portcullis_80

Portcullis_81

Portcullis_82
(DNA methylase)

Portcullis_83

Portcullis_84

Portcullis_85
(HNH endonuclease)

Portcullis_86
(helix-turn-helix DNA binding domain protein)

Portcullis_87

Portcullis_88

Portcullis_89

Portcullis_90

Portcullis_91

Portcullis_92

Portcullis_93

Portcullis_94

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT639651
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 3.18*10^11 pfu/ml
Date of SEA Lysate Titering Dec 5, 2016
Pitt Freezer Box# 39
Pitt Freezer Box Grid# A12
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload