Detailed Information for Phage QueenBey |
Discovery Information |
Isolation Host | Propionibacterium acnes ATCC 6919 |
Found By | Erica Flores |
Year Found | 2014 |
Location Found | Los Angeles, CA USA |
Finding Institution | University of California, Los Angeles |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 37°C |
GPS Coordinates | 34.065 N, 118.4425 W Map |
Discovery Notes | Isolated from forehead microcomedones.
Phage isolation and genome annotation performed by Erica Flores, Ayesha Khan, Mario Pizarro, and Eduardo Silva (UCLA). DNA preparation prepared by Krisanavane Reddi (UCLA). Assembly and quality control of annotation results performed by Jordan Moberg Parker and Dallas Mould (UCLA). |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | May 26, 2015 |
Sequencing Facility | The UCLA Genotyping and Sequencing Core |
Shotgun Sequencing Method | 454 Pyrosequencing |
Approximate Shotgun Coverage | 122 |
Genome length (bp) | 29338 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | TCGTACGGCTT |
GC Content | 54.1% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | BU |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | clear, circular plaques that were similar in morphology across iteration. Avg diameter:5.987mm, Size Range: 5.367-6.430mm |
Morphotype | Siphoviridae |
Number of Genes | 43 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | KR347355 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
28 |
Pitt Freezer Box Grid# |
D8 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |