Gordonia phage RobinSparkles
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Detailed Information for Phage RobinSparkles
Discovery Information
Isolation HostGordonia terrae 3612
Found ByJennifer Roscher
Year Found2016
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.444068 N, 79.953908 W Map
Discovery NotesThe soil was dry and a light brown color. In addition, the soil was collected at 8:38 PM on September 11, 2016. The temperature was approximately 78 degrees Fahrenheit.
Naming NotesThe name came from How I Met Your Mother
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 15, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage476
Genome length (bp)81834
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length250 bp
GC Content46.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCX
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque NotesThe plaques are clear and circular, and have a diameter of about 1 mm
Has been Phamerated?Yes
Gene List

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RobinSparkles_1

RobinSparkles_2

RobinSparkles_3

RobinSparkles_4
(DNA primase)

RobinSparkles_5
(HNH endonuclease)

RobinSparkles_6
(HNH endonuclease)

RobinSparkles_7

RobinSparkles_8

RobinSparkles_9

RobinSparkles_10

RobinSparkles_11

RobinSparkles_12
(DNA primase)

RobinSparkles_13
(terminase small subunit)

RobinSparkles_14
(terminase large subunit)

RobinSparkles_15
(portal protein)

RobinSparkles_16
(capsid maturation protease)

RobinSparkles_17
(capsid decoration protein)

RobinSparkles_18
(major capsid protein)

RobinSparkles_19

RobinSparkles_20
(head-to-tail connector complex protein)

RobinSparkles_21

RobinSparkles_22

RobinSparkles_23

RobinSparkles_24
(major tail protein)

RobinSparkles_25
(tail assembly chaperone)

RobinSparkles_26
(tail assembly chaperone)

RobinSparkles_27
(tape measure protein)

RobinSparkles_28
(minor tail protein)

RobinSparkles_29
(minor tail protein)

RobinSparkles_30
(minor tail protein)

RobinSparkles_31

RobinSparkles_32
(lysin A)

RobinSparkles_33
(holin)

RobinSparkles_34
(membrane protein)

RobinSparkles_35
(membrane protein)

RobinSparkles_36

RobinSparkles_37

RobinSparkles_38
(minor tail protein)

RobinSparkles_39
(minor tail protein)

RobinSparkles_40

RobinSparkles_41
(minor tail protein)

RobinSparkles_42
(lysin B)

RobinSparkles_43

RobinSparkles_44
(nuclease)

RobinSparkles_45

RobinSparkles_46

RobinSparkles_47
(WhiB family transcription factor)

RobinSparkles_48

RobinSparkles_49

RobinSparkles_50

RobinSparkles_51

RobinSparkles_52
(MazG-like nucleotide pyrophosphohydrolase)

RobinSparkles_53

RobinSparkles_54

RobinSparkles_55
(WhiB family transcription factor)

RobinSparkles_56
(exonuclease)

RobinSparkles_57
(DNA polymerase III sliding clamp)

RobinSparkles_58

RobinSparkles_59
(ribonuclease)

RobinSparkles_60
(excise)

RobinSparkles_61
(helicase)

RobinSparkles_62

RobinSparkles_63
(ThyX-like thymidylate synthase)

RobinSparkles_64
(HNH endonuclease)

RobinSparkles_65

RobinSparkles_66

RobinSparkles_67

RobinSparkles_68
(HTH DNA-binding protein)

RobinSparkles_69

RobinSparkles_70

RobinSparkles_71

RobinSparkles_72
(integrase)

RobinSparkles_73

RobinSparkles_74

RobinSparkles_75

RobinSparkles_76

RobinSparkles_77

RobinSparkles_78

RobinSparkles_79

RobinSparkles_80

RobinSparkles_81

RobinSparkles_82

RobinSparkles_83

RobinSparkles_84

RobinSparkles_85

RobinSparkles_86

RobinSparkles_87

RobinSparkles_88
(AAA-ATPase)

RobinSparkles_89

RobinSparkles_90

RobinSparkles_91

RobinSparkles_92

RobinSparkles_93

RobinSparkles_94

RobinSparkles_95

RobinSparkles_96

RobinSparkles_97

RobinSparkles_98

RobinSparkles_99

RobinSparkles_100

RobinSparkles_101

RobinSparkles_102
(HNH endonuclease)

RobinSparkles_105

RobinSparkles_106

RobinSparkles_107

RobinSparkles_108

RobinSparkles_109

RobinSparkles_110

RobinSparkles_111

RobinSparkles_112

RobinSparkles_113

RobinSparkles_114

RobinSparkles_115

RobinSparkles_116

RobinSparkles_117

RobinSparkles_118

RobinSparkles_119

RobinSparkles_120

RobinSparkles_121

RobinSparkles_122

RobinSparkles_123

RobinSparkles_124

RobinSparkles_125

RobinSparkles_126

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH479923
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 42
Pitt Freezer Box Grid# G9
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload