Mycobacterium phage Shrimp
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Detailed Information for Phage Shrimp
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySamantha Sorenson
Year Found2011
Location FoundBloomington, IL USA
Finding InstitutionIllinois Wesleyan University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.489261 N, 88.991338 W Map
Discovery NotesTemp=26° C
Soil type= dry
Environment=in the shade, under a tree
Depth of soil= 1in
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 31, 2012
Approximate Shotgun Coverage300
Genome length (bp)155714
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

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Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

Amataga (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Cane17 (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Doodle1 (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Lionheart (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

OaklaforG (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

Salacia (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Plaque Notesturbid, comet-shaped plaques at 24 hours
no variation between my plaques
plaque diameter= less than 1mm
MorphotypeMyoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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Shrimp_1

Shrimp_2

Shrimp_3
(nucleotidyltransferase)

Shrimp_4

Shrimp_5

Shrimp_6

Shrimp_7

Shrimp_8

Shrimp_9

Shrimp_10

Shrimp_11

Shrimp_12

Shrimp_13

Shrimp_14

Shrimp_15

Shrimp_16

Shrimp_17

Shrimp_18
(histidine triad domain protein)

Shrimp_19

Shrimp_20

Shrimp_21

Shrimp_22

Shrimp_23

Shrimp_24

Shrimp_25

Shrimp_26

Shrimp_27

Shrimp_28

Shrimp_29
(band 7 protein)

Shrimp_30

Shrimp_31

Shrimp_32

Shrimp_33

Shrimp_34

Shrimp_35

Shrimp_36

Shrimp_37

Shrimp_38

Shrimp_39

Shrimp_40

Shrimp_41

Shrimp_42

Shrimp_43

Shrimp_44

Shrimp_45

Shrimp_46

Shrimp_47

Shrimp_48

Shrimp_49

Shrimp_50

Shrimp_51

Shrimp_52

Shrimp_53

Shrimp_54

Shrimp_55

Shrimp_56

Shrimp_57

Shrimp_58

Shrimp_59

Shrimp_60

Shrimp_61

Shrimp_62

Shrimp_63

Shrimp_64

Shrimp_65

Shrimp_66

Shrimp_67

Shrimp_68

Shrimp_69

Shrimp_70

Shrimp_71

Shrimp_72

Shrimp_73

Shrimp_74

Shrimp_75

Shrimp_76

Shrimp_77

Shrimp_78

Shrimp_79

Shrimp_80

Shrimp_81

Shrimp_82

Shrimp_83
(ParB-like)

Shrimp_88

Shrimp_89

Shrimp_90
(portal)

Shrimp_91

Shrimp_92

Shrimp_93
(ThyX-like)

Shrimp_94

Shrimp_95
(phosphoesterase)

Shrimp_96
(LysM domain)

Shrimp_97

Shrimp_98

Shrimp_99
(major capsid protein)

Shrimp_100

Shrimp_101

Shrimp_102

Shrimp_103

Shrimp_104

Shrimp_105

Shrimp_106

Shrimp_107

Shrimp_108

Shrimp_109

Shrimp_110

Shrimp_111

Shrimp_112

Shrimp_113

Shrimp_114

Shrimp_115

Shrimp_116

Shrimp_117

Shrimp_118

Shrimp_119

Shrimp_120

Shrimp_121

Shrimp_122

Shrimp_123

Shrimp_124

Shrimp_125

Shrimp_126

Shrimp_127

Shrimp_128

Shrimp_129

Shrimp_130
(tail assembly chaperone)

Shrimp_131
(tail assembly chaperone)

Shrimp_132
(tapemeasure)

Shrimp_133

Shrimp_134

Shrimp_135

Shrimp_136
(minor tail protein)

Shrimp_137

Shrimp_138
(minor tail protein)

Shrimp_139
(tail lysozyme)

Shrimp_140
(baseplate J)

Shrimp_141

Shrimp_142

Shrimp_143

Shrimp_144

Shrimp_145
(minor tail protein)

Shrimp_146

Shrimp_147

Shrimp_148

Shrimp_149

Shrimp_150

Shrimp_151

Shrimp_152

Shrimp_153

Shrimp_154

Shrimp_155

Shrimp_159

Shrimp_160
(Peptidyl-tRNA hydrolase)

Shrimp_174
(HNH endonuclease)

Shrimp_176
(D-alanyl-D-alanine carboxypeptidase)

Shrimp_177

Shrimp_188

Shrimp_189
(helicase)

Shrimp_190

Shrimp_191

Shrimp_192

Shrimp_193

Shrimp_194

Shrimp_195

Shrimp_196

Shrimp_197

Shrimp_198

Shrimp_199

Shrimp_200
(ArgD)

Shrimp_201

Shrimp_202

Shrimp_203

Shrimp_204
(DnaC)

Shrimp_205
(DnaB)

Shrimp_206

Shrimp_207
(DNA Primase)

Shrimp_208

Shrimp_209
(J-Domain)

Shrimp_210

Shrimp_211
(DNA Pol III alpha)

Shrimp_212
(RF1)

Shrimp_213
(RecA)

Shrimp_214

Shrimp_215

Shrimp_216
(HNH endonuclease domain)

Shrimp_217
(RusA)

Shrimp_218

Shrimp_219

Shrimp_220

Shrimp_221

Shrimp_222

Shrimp_223

Shrimp_224

Shrimp_227

Shrimp_228

Shrimp_229

Shrimp_230

Shrimp_231

Shrimp_232

Shrimp_233

Shrimp_234

Shrimp_235
(Ro)

Shrimp_236

Shrimp_237

Shrimp_238

Shrimp_239

Shrimp_240

Shrimp_241

Shrimp_242
(Glycosyl transferase)

Shrimp_243

Shrimp_244
(Galactosyltransferase)

Shrimp_245
(galactosaminyltransferase)

Shrimp_246

Shrimp_247
(Glycosyltransferase)

Shrimp_248

Shrimp_249

Shrimp_250

Shrimp_251

Shrimp_252
(HNH homing endonuclease)

Shrimp_253
(Lysin A)

Shrimp_254
(holin)

Shrimp_255
(Lysin B)

Shrimp_256
(terminase)

Shrimp_257

Shrimp_258

Shrimp_259

Shrimp_260

Shrimp_261

Shrimp_262

Shrimp_263

Shrimp_264

Shrimp_265

Shrimp_266

Shrimp_267

Shrimp_268

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKF024734
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
EM PictureDownload