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Mycobacterium phage Silvafighter
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Detailed Information for Phage Silvafighter
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByCole Goodrich
Year Found2016
Location FoundOxford, OH United States
Finding InstitutionMiami University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates39.508956 N, 84.73155 W Map
Discovery NotesFound within a small park on the campus of Miami University, beneath the shade of an oak tree.
Naming NotesSilva meaning forest in Latin and fighter because of the resilience of the phage itself.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 28, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1222
Genome length (bp)43243
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCCCGCCGCAATGG
GC Content66.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterN
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Silvafighter_1

Silvafighter_2
(terminase)

Silvafighter_3

Silvafighter_4
(portal protein)

Silvafighter_5
(capsid maturation protease)

Silvafighter_6
(major capsid protein)

Silvafighter_7
(head-to-tail-connector complex protein)

Silvafighter_8
(head-to-tail connector complex protein)

Silvafighter_9
(head-to-tail connector complex protein)

Silvafighter_10

Silvafighter_11

Silvafighter_12
(head-to-tail connector complex protein)

Silvafighter_13
(major tail protein)

Silvafighter_14
(tail assembly chaperone)

Silvafighter_15
(tail assembly chaperone)

Silvafighter_16
(tape measure protein)

Silvafighter_17
(minor tail protein)

Silvafighter_18
(minor tail protein)

Silvafighter_19
(minor tail protein)

Silvafighter_20
(minor tail protein)

Silvafighter_21

Silvafighter_22

Silvafighter_23

Silvafighter_24

Silvafighter_25

Silvafighter_26

Silvafighter_27

Silvafighter_28
(lysin A)

Silvafighter_29
(holin)

Silvafighter_30

Silvafighter_31

Silvafighter_32

Silvafighter_33

Silvafighter_34

Silvafighter_35

Silvafighter_36

Silvafighter_37
(integrase)

Silvafighter_38
(immunity repressor)

Silvafighter_39
(excise)

Silvafighter_40

Silvafighter_41

Silvafighter_42

Silvafighter_43

Silvafighter_44

Silvafighter_45

Silvafighter_46
(WhiB family transcription factor)

Silvafighter_47

Silvafighter_48
(RecE exonuclease)

Silvafighter_49
(RecT ssDNA binding protein)

Silvafighter_50

Silvafighter_51
(NrdH glutaredoxin)

Silvafighter_52

Silvafighter_53

Silvafighter_54

Silvafighter_55

Silvafighter_56

Silvafighter_57

Silvafighter_58

Silvafighter_59

Silvafighter_60

Silvafighter_61

Silvafighter_62

Silvafighter_63
(HNH endonuclease)

Silvafighter_64

Silvafighter_65

Silvafighter_66

Silvafighter_67

Silvafighter_68

Silvafighter_69

Silvafighter_70
(Helix-Turn-Helix DNA binding domain)

Silvafighter_71

Silvafighter_72

Silvafighter_73

Silvafighter_74

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH316570
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 31
Pitt Freezer Box Grid# G4
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload