Mycobacterium phage SkinnyPete
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Detailed Information for Phage SkinnyPete
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKristen Wade
Year Found2012
Location FoundRichmond, VA United States
Finding InstitutionVirginia Commonwealth University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates37.325703 N, 77.205717 W Map
Discovery NotesFound in a rain water run-off collection pool at the VCU Rice Center. About 6 inches under the surface, plants/algae in the water.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 15, 2013
Sequencing FacilityVirginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method454 Pyrosequencing
Approximate Shotgun Coverage380
Sanger Finishing Reactions13
Genome length (bp)43478
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCCCGCCGCCTTGG
GC Content66.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterN
Subcluster--
Other Cluster Members
Plaque NotesMostly clear, slightly turbid around edges of plaque. Large and small sizes. Large: 2.5-3mm diameter, small:0.5-1mm diameter.
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes67
Has been Phamerated?Yes
Gene List
Submitted Annotation in DNA Master FormatDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU935729
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload