Mycobacterium phage Spud
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Detailed Information for Phage Spud
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByJM Kee
Year Found2004
Location FoundPittsburgh , PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.44422 N, 79.953218 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 16, 2008
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodSanger Sequencing
Genome length (bp)154906
Character of genome endsCircularly Permuted
GC Content64.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

Click to View

Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

MorphotypeMyoviridae
Final annotation complete?Yes
Number of Genes222
Number of tRNAs35
Number of tmRNAs1
Has been Phamerated?Yes
Gene List

Click to View

Spud_1

Spud_2

Spud_3
(NrdC)

Spud_4

Spud_5

Spud_6

Spud_7

Spud_8

Spud_9

Spud_10

Spud_11

Spud_12

Spud_13

Spud_14

Spud_15

Spud_16

Spud_17

Spud_18

Spud_19

Spud_20

Spud_21

Spud_22

Spud_23

Spud_24

Spud_25

Spud_26

Spud_27

Spud_28

Spud_29

Spud_30

Spud_31

Spud_32

Spud_33

Spud_34

Spud_35

Spud_36

Spud_37

Spud_38

Spud_39

Spud_40

Spud_41

Spud_42

Spud_43

Spud_44

Spud_45

Spud_46

Spud_47

Spud_48

Spud_49

Spud_50

Spud_51

Spud_52

Spud_53

Spud_54

Spud_55

Spud_56

Spud_57

Spud_58

Spud_59

Spud_60

Spud_61

Spud_62

Spud_63

Spud_64

Spud_65

Spud_66

Spud_67

Spud_68

Spud_69

Spud_70

Spud_71

Spud_72

Spud_73

Spud_74

Spud_75

Spud_76

Spud_77

Spud_78

Spud_79

Spud_80

Spud_81

Spud_82

Spud_88

Spud_89

Spud_90

Spud_91

Spud_92
(conserved membrane protein, Mycobacterium marinum M)

Spud_93
(ThyX)

Spud_94

Spud_95

Spud_96

Spud_97
(tape measure)

Spud_98

Spud_99

Spud_100

Spud_101

Spud_102

Spud_103

Spud_104

Spud_105

Spud_106

Spud_107

Spud_108

Spud_109

Spud_110

Spud_111

Spud_112

Spud_113

Spud_114

Spud_115

Spud_116

Spud_117

Spud_118

Spud_119

Spud_120

Spud_121

Spud_122

Spud_123

Spud_124

Spud_125

Spud_126

Spud_127

Spud_128

Spud_129

Spud_130

Spud_131

Spud_132

Spud_133

Spud_134

Spud_135
(P60 lipoprotein; putative LysA)

Spud_136

Spud_137

Spud_138

Spud_139

Spud_140

Spud_141

Spud_142

Spud_143

Spud_144

Spud_145

Spud_146

Spud_147

Spud_148

Spud_149

Spud_150

Spud_151

Spud_155

Spud_156

Spud_171

Spud_183
(helicase)

Spud_184

Spud_185

Spud_186

Spud_187

Spud_188

Spud_189

Spud_190

Spud_191

Spud_192

Spud_193
(aminotransferase)

Spud_194

Spud_195

Spud_196
(DnaC)

Spud_197
(helicase DnaB)

Spud_198

Spud_199
(DNA primase)

Spud_200

Spud_201

Spud_202

Spud_203
(DNA pol III alpha)

Spud_204
(RF1)

Spud_205
(RecA)

Spud_206

Spud_207

Spud_208

Spud_209
(RusA)

Spud_210

Spud_211

Spud_212

Spud_213

Spud_214

Spud_215

Spud_216

Spud_219

Spud_220

Spud_221

Spud_222

Spud_223

Spud_224

Spud_225

Spud_226
(Ro)

Spud_227

Spud_228

Spud_229

Spud_230

Spud_231

Spud_232
(glycosyltransferase)

Spud_233

Spud_234

Spud_235

Spud_236

Spud_237

Spud_238

Spud_239

Spud_240

Spud_241

Spud_242
(LysA)

Spud_243

Spud_244
(LysB)

Spud_245

Spud_246

Spud_247

Spud_248

Spud_249

Spud_250
(PnK)

Spud_251

Spud_252
(kinase)

Spud_253

Spud_254

Spud_255

Spud_256
(PurA)

Spud_257

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionEU826468
Refseq NumberNC_011270
Available Files
Plaque PictureDownload
Virtual Digest PictureDownload
EM PictureDownload