Streptomyces phage SqueakyClean
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Detailed Information for Phage SqueakyClean
Discovery Information
Isolation HostStreptomyces xanthochromogenes NRRL B-5410
Found ByPeter Anghel
Year Found2016
Location FoundDenton, TX USA
Finding InstitutionUniversity of North Texas
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates33.196647 N, 97.114939 W Map
Discovery Notes8/28/16 6:18 p.m.
Temperature-89 degrees Fahrenheit
Moist
Dark
Close proximity to building complexes and roadways
Infrequent foot traffic
Naming NotesSoil looked exceptionally clean.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 14, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2535
Genome length (bp)50837
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGCCGTGTCTT
GC Content67.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBD
SubclusterBD2
Other Cluster Members
Plaque Notes1 mm
circular
cloudy
MorphotypeSiphoviridae
Final annotation complete?Yes
Number of Genes78
Has been Phamerated?Yes
Gene List

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SqueakyClean_1

SqueakyClean_2
(helix-turn-helix DNA binding domain protein)

SqueakyClean_3
(HNH endonuclease)

SqueakyClean_4

SqueakyClean_5
(thioredoxin)

SqueakyClean_6

SqueakyClean_7
(terminase large subunit)

SqueakyClean_8
(portal protein)

SqueakyClean_9

SqueakyClean_10
(scaffolding protein)

SqueakyClean_11
(major capsid protein)

SqueakyClean_12

SqueakyClean_13
(head-to-tail connector protein)

SqueakyClean_14

SqueakyClean_15

SqueakyClean_16
(major tail protein)

SqueakyClean_17
(tail assembly chaperone)

SqueakyClean_18
(tail assembly chaperone)

SqueakyClean_19
(tape measure protein)

SqueakyClean_20
(minor tail protein)

SqueakyClean_21
(minor tail protein)

SqueakyClean_22

SqueakyClean_23

SqueakyClean_24

SqueakyClean_25
(minor tail protein)

SqueakyClean_26

SqueakyClean_27
(lysin)

SqueakyClean_28

SqueakyClean_29

SqueakyClean_30
(immunity repressor)

SqueakyClean_31
(exonuclease)

SqueakyClean_32

SqueakyClean_33

SqueakyClean_34
(deoxycytidylate deaminase)

SqueakyClean_35
(dsDNA helicase)

SqueakyClean_36
(holliday junction resolvase)

SqueakyClean_37

SqueakyClean_38
(DNA primase)

SqueakyClean_39
(DNA primase)

SqueakyClean_40

SqueakyClean_41

SqueakyClean_42

SqueakyClean_43
(endonuclease)

SqueakyClean_44

SqueakyClean_45
(helix-turn-helix DNA binding domain protein)

SqueakyClean_46

SqueakyClean_47
(ribonucleotide reductase)

SqueakyClean_48

SqueakyClean_49

SqueakyClean_50
(helix-turn-helix DNA binding domain protein)

SqueakyClean_51

SqueakyClean_52
(integrase)

SqueakyClean_53

SqueakyClean_54

SqueakyClean_55
(thymidylate synthase)

SqueakyClean_56

SqueakyClean_57

SqueakyClean_58

SqueakyClean_59

SqueakyClean_60

SqueakyClean_61

SqueakyClean_62

SqueakyClean_63
(dNMP kinase)

SqueakyClean_64

SqueakyClean_65

SqueakyClean_66

SqueakyClean_67

SqueakyClean_68

SqueakyClean_69

SqueakyClean_70

SqueakyClean_71

SqueakyClean_72

SqueakyClean_73

SqueakyClean_74

SqueakyClean_75

SqueakyClean_76

SqueakyClean_77

SqueakyClean_78

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF766047
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload