Mycobacterium phage Tapioca
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Detailed Information for Phage Tapioca
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByLauren Eastep
Year Found2015
Location FoundMorehead , KY USA
Finding InstitutionMorehead State University
ProgramKentucky Biomedical Infrastructure Network Small Genomes Discovery Program
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates38.1845 N, 83.4348 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 15, 2015
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage6181
Genome length (bp)44205
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCCCGCCGCAATGG
GC Content66.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterN
Subcluster--
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Tapioca_1

Tapioca_2
(terminase)

Tapioca_3

Tapioca_4
(portal protein)

Tapioca_5
(capsid maturation protease)

Tapioca_6
(major capsid protein)

Tapioca_7
(head-to-tail connector complex protein)

Tapioca_8
(head-to-tail connector complex protein)

Tapioca_9
(head-to-tail connector complex protein)

Tapioca_10
(head-to-tail connector complex protein)

Tapioca_11
(head-to-tail connector complex protein)

Tapioca_12
(head-to-tail connector complex protein)

Tapioca_13
(major tail protein)

Tapioca_14
(tail assembly chaperone)

Tapioca_15
(tail assembly chaperone)

Tapioca_16
(tape measure protein)

Tapioca_17
(minor tail protein)

Tapioca_18
(minor tail protein)

Tapioca_19
(minor tail protein)

Tapioca_20
(minor tail protein)

Tapioca_21

Tapioca_22
(minor tail protein)

Tapioca_23

Tapioca_24

Tapioca_25
(membrane protein)

Tapioca_26

Tapioca_27

Tapioca_28
(lysin A)

Tapioca_29
(holin)

Tapioca_30
(membrane protein)

Tapioca_31

Tapioca_32

Tapioca_33
(membrane protein)

Tapioca_34
(HicB-like antitoxin)

Tapioca_35

Tapioca_36
(membrane protein)

Tapioca_37
(integrase)

Tapioca_38
(immunity repressor)

Tapioca_39
(Cro protein)

Tapioca_40

Tapioca_41

Tapioca_42

Tapioca_43

Tapioca_44
(membrane protein)

Tapioca_45

Tapioca_46
(WhiB family transcription factor)

Tapioca_47
(WhiB family transcription factor)

Tapioca_48
(membrane protein)

Tapioca_49
(RecE-like exonuclease)

Tapioca_50
(RecT-like ssDNA binding protein)

Tapioca_51
(RusA-like resolvase)

Tapioca_52
(NrdH-like glutaredoxin)

Tapioca_53

Tapioca_54

Tapioca_55

Tapioca_56
(DNA methylase)

Tapioca_57

Tapioca_58

Tapioca_59
(HNH endonuclease)

Tapioca_60

Tapioca_61

Tapioca_62

Tapioca_63
(DnaC-like helicase loader)

Tapioca_64

Tapioca_65

Tapioca_66
(excise)

Tapioca_67

Tapioca_68

Tapioca_69

Tapioca_70
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH697593
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 6.0x10^10 pfu/mL
Pitt Freezer Box# 28
Pitt Freezer Box Grid# C6
Available Files
Restriction Digest PictureDownload
GenBank File for PhameratorDownload