Rhodococcus phage Trina
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Detailed Information for Phage Trina
Discovery Information
Isolation HostRhodococcus erythropolis RIA 643
Found ByJordan Wagner
Year Found2014
Location FoundBenton, LA USA
Finding InstitutionUniversity of Louisiana at Monroe
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates32.704374 N, 93.759579 W Map
Discovery NotesSoil sample was located along the edge of a homemade bird bath that used to be a plastic tub lid. Soil sample was in a shaded area and was located 3 inches underneath pine straw. The bird bath is in the backyard of my grand parents house. Soil sample was moist due to a recent rain shower.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 14, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1312
Genome length (bp)139262
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length2860 bp
GC Content44.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterSingleton
Subcluster--
Other Cluster Members
Plaque NotesPlaques appeared after 48 hours; numerous, small "pin pricks." Clear plaques.
Final annotation complete?No
Has been Phamerated?Yes
Gene List

Click to View

Trina_1

Trina_2

Trina_3

Trina_4

Trina_5

Trina_6

Trina_7

Trina_8

Trina_9

Trina_10

Trina_11

Trina_12

Trina_13

Trina_14

Trina_15

Trina_16

Trina_17

Trina_18

Trina_19

Trina_20

Trina_21

Trina_22

Trina_23

Trina_24

Trina_25

Trina_26

Trina_27

Trina_28

Trina_29

Trina_30

Trina_31

Trina_32

Trina_33

Trina_34

Trina_35

Trina_36

Trina_37

Trina_38

Trina_39

Trina_40
(Hydrolase)

Trina_41
(ADP ribosylglycohydrolase)

Trina_42
(ThyX thymidylate synthase)

Trina_43

Trina_44

Trina_45

Trina_46

Trina_47
(methyltransferase)

Trina_48

Trina_49

Trina_50
(RecD-like helicase)

Trina_51

Trina_52

Trina_53

Trina_54

Trina_55

Trina_56
(Glycosyltransferase)

Trina_57
(HNH endonuclease)

Trina_58
(Ribonucleoside reductase)

Trina_59
(Ribonucleoside reductase)

Trina_60

Trina_61
(lysin A)

Trina_62

Trina_63
(tailspike protein)

Trina_64
(Minor tail protein, hydrolase)

Trina_65

Trina_66

Trina_67

Trina_68

Trina_69
(portal protein)

Trina_70

Trina_71
(capsid maturation protease)

Trina_72
(major capsid protein)

Trina_73

Trina_74

Trina_75

Trina_76

Trina_77

Trina_78

Trina_79

Trina_80

Trina_81
(tape measure protein)

Trina_82

Trina_83
(minor tail protein)

Trina_84

Trina_85

Trina_86
(minor tail protein)

Trina_87

Trina_88

Trina_89

Trina_90

Trina_91
(phosphoesterase)

Trina_92

Trina_93

Trina_94

Trina_95

Trina_96

Trina_97
(DNA helicase)

Trina_98

Trina_99
(DNA primase)

Trina_100
(ssDNA binding protein)

Trina_101
(DnaE DNA polymerase III (alpha))

Trina_102
(DnaE DNA polymerase III (alpha))

Trina_103

Trina_104
(MazG nucleotide pyrophosphohydrolase)

Trina_105
(RecA DNA Recombinase)

Trina_106

Trina_107

Trina_108
(exonuclease)

Trina_109
(resolvase, RuvC-like)

Trina_110

Trina_111

Trina_112
(HTH DNA binding protein)

Trina_113

Trina_114

Trina_115

Trina_116
(terminase)

Trina_117
(HNH endonuclease)

Trina_118

Trina_119

Trina_120

Trina_121

Trina_126

Trina_128

Trina_129

Trina_130

Trina_131

Trina_132

Trina_134

Trina_137
(Ro RNA binding protein)

Trina_138
(membrane protein, Band-7 like)

Trina_139

Trina_143

Trina_145
(phosphohydrolase)

Trina_146

Trina_147

Trina_148

Trina_149

Trina_150

Trina_151
(Lysin B)

Trina_155

Trina_156
(rIIA-like protein, protector from early phage lysis)

Trina_157
(rIIB-like protein, protector from early phage lysis)

Trina_162
(DNA ligase)

Trina_163
(Helix-Turn-Helix DNA binding domain)

Trina_165

Trina_166

Trina_171

Trina_172

Trina_173

Trina_174

Trina_175

Trina_180

Trina_181

Trina_182

Trina_183

Trina_184

Trina_185

Trina_188

Trina_189

Trina_192
(thioredoxin)

Trina_193
(nucleotidyltransferase)

Trina_194

Trina_195
(metallophosphoesterase)

Trina_196
(HNH endonuclease)

Trina_197
(chorismate mutase domain of P-protein)

Trina_198

Trina_200

Trina_201

Trina_202
(phosphohydrolase)

Trina_203

Trina_204

Trina_205

Trina_206

Trina_207

Trina_208
(polynucleotide kinase)

Trina_209

Trina_210

Trina_211

Trina_212

Trina_213

Trina_214

Trina_215

Trina_216

Trina_217

Trina_218

Trina_219

Trina_220

Trina_221

Trina_222
(WhiB family transcription factor)

Trina_223

Trina_224

Trina_225

Trina_226

Trina_227

Trina_228

Trina_229

Trina_230

Trina_231

Trina_232

Trina_233

Trina_234

Trina_235

Trina_236

Trina_237

Trina_238

Trina_239

Trina_240

Trina_241

Trina_242

Trina_243

Trina_244

Trina_245

Trina_246

Trina_247

Trina_248

Trina_249

Trina_250

Trina_251

Trina_252

Trina_253
(ADP ribose-1-P processing protein, antitoxin)

Trina_254

Trina_255

Trina_256

Trina_257

Trina_258

Trina_259

Trina_260

Trina_261

Trina_262

Trina_263

Trina_264

Trina_265

Trina_266

Trina_267

Trina_268

Trina_269

Trina_270

Trina_271

Trina_272

Trina_273

Trina_274

Trina_275

Trina_276

Trina_277

Trina_278

Trina_279

Trina_280

Trina_281

Trina_282

Trina_283

Trina_284

Trina_285

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF668286
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload