Mycobacterium phage Yucca
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Detailed Information for Phage Yucca
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByR. Lane Shafer
Year Found2015
Location FoundBloomington, IL USA
Finding InstitutionIllinois Wesleyan University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature19°C
GPS Coordinates40.4825 N, 88.979722 W Map
Discovery NotesSoil sample taken from Sarah Davis garden (on the David Davis mansion), which dates back to 1871. The garden is located in a fairly urban area, in close proximity to footpaths and sample is located close to other plants. The soil was taken from about 9 cm deep and the soil itself is dark and moist.

*Phage isolated using Direct Plating technique
Naming NotesThe name originates from the genus of the plant that the sample was taken from.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 8, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage110
Genome length (bp)155582
Character of genome endsCircularly Permuted
GC Content64.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterC
SubclusterC1
Other Cluster Members

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Boonesok (None)

CLach (None)

DavidMina (None)

DitchDweller (None)

Elpis (None)

Genet (None)

Hard2get (None)

Hippocrates (None)

Kali (None)

LittleSpot (None)

Lsquared (None)

Marlex (None)

Minipoke (None)

PeeWee (None)

Pesky7 (None)

Phomnie (None)

Phyllis (None)

Roku (None)

Sagamore (None)

Samarai (None)

ShenziUR (None)

TinyC (None)

Trilla23 (None)

Turret (None)

Squidney (A3)

Ading (C1)

Adlitam (C1)

Alice (C1)

ArcherS7 (C1)

Astraea (C1)

Atlantean (C1)

Atlas (C1)

Audrick (C1)

Ava3 (C1)

BadAgartude (C1)

Bangla1971 (C1)

BeanWater (C1)

Bigswole (C1)

Bipolarisk (C1)

Breeniome (C1)

Bxz1 (C1)

Cali (C1)

Catera (C1)

CharlieB (C1)

ChickenPhender (C1)

Colt (C1)

Daffodil (C1)

Dandelion (C1)

Delilah (C1)

Derek (C1)

Drazdys (C1)

DrPhinkDaddy (C1)

DTDevon (C1)

EmmaElysia (C1)

EmToTheThree (C1)

Erdmann (C1)

ErnieJ (C1)

Essence (C1)

ET08 (C1)

Ewok (C1)

Exxus285 (C1)

Flabslab (C1)

FoxtrotP1 (C1)

FrayBell (C1)

Gabriel (C1)

Ghost (C1)

Gizmo (C1)

HarrySpotter (C1)

HyRo (C1)

InterFolia (C1)

Iota (C1)

Isee1101 (C1)

JennanaJr (C1)

Khaleesi (C1)

Koguma (C1)

LifeSavor (C1)

LinStu (C1)

Littleton (C1)

Loanshark (C1)

LRRHood (C1)

Lukilu (C1)

Lysocool (C1)

Melpomini (C1)

MePac (C1)

MikeLiesIn (C1)

Momo (C1)

MoMoMixon (C1)

Morizzled23 (C1)

Napoleon13 (C1)

Nappy (C1)

Nicolasphaqe (C1)

Nidhogg (C1)

NoodleTree (C1)

Norm (C1)

NuevoMundo (C1)

ParkTD (C1)

Patch (C1)

Patter (C1)

Phox (C1)

Phusco (C1)

Pier (C1)

Pio (C1)

Pivoine (C1)

Pleione (C1)

QBert (C1)

Rizal (C1)

Roots515 (C1)

SandySandal (C1)

ScottMcG (C1)

Sebastian (C1)

Sebata (C1)

ShankPowerGod (C1)

Shaqnato (C1)

ShiaLabeouf (C1)

Shnickers (C1)

Shrimp (C1)

SmallFry (C1)

Specks (C1)

Sprinklers (C1)

Spud (C1)

Stubby (C1)

Teardrop (C1)

TheO (C1)

Thuathua (C1)

TinyTim (C1)

Tonenili (C1)

Tortoise16 (C1)

Tyke (C1)

Wally (C1)

Willis (C1)

Yucca (C1)

Zeenon (C1)

ZygoTaiga (C1)

Matcha (C2)

Myrna (C2)

Phabba (C2)

SimSimmers (C2)

SrishMeg2525 (C2)

Plaque NotesTypically small plaques, varying in size from .5 - 2.0 mm, and averages 1.5 mm in diameter. Plaques are clear and concise with no bullseye appearance. Plaques take about 48 hours to fully develop.
MorphotypeMyoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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Yucca_1

Yucca_2

Yucca_3
(nucleotidyl transferase)

Yucca_4

Yucca_5

Yucca_6

Yucca_7

Yucca_8

Yucca_9

Yucca_10

Yucca_11

Yucca_12

Yucca_13

Yucca_14

Yucca_15

Yucca_16

Yucca_17

Yucca_18
(Histidine triad nucleotide binding protein)

Yucca_19

Yucca_20

Yucca_21

Yucca_22

Yucca_23

Yucca_24

Yucca_25

Yucca_26

Yucca_27

Yucca_28

Yucca_29
(membrane protein, band-7 like)

Yucca_30

Yucca_31
(helix-turn helix DNA binding protein)

Yucca_32

Yucca_33

Yucca_34

Yucca_35
(DNA binding domain)

Yucca_36
(DNA binding domain)

Yucca_37

Yucca_38

Yucca_39

Yucca_40

Yucca_41

Yucca_42

Yucca_43

Yucca_44

Yucca_45

Yucca_46

Yucca_47

Yucca_48

Yucca_49

Yucca_50

Yucca_51

Yucca_52

Yucca_53

Yucca_54

Yucca_55

Yucca_56

Yucca_57

Yucca_58

Yucca_59

Yucca_60

Yucca_61

Yucca_62

Yucca_63
(helix-turn-helix DNA binding domain)

Yucca_64

Yucca_65

Yucca_66

Yucca_67

Yucca_68

Yucca_69

Yucca_70

Yucca_71

Yucca_72

Yucca_73

Yucca_74

Yucca_75

Yucca_76

Yucca_77

Yucca_78

Yucca_79

Yucca_80

Yucca_81

Yucca_82
(ParB-like domain)

Yucca_88

Yucca_89

Yucca_90
(portal protein)

Yucca_91

Yucca_92

Yucca_93
(Thyx thymidylate synthase)

Yucca_94

Yucca_95
(RNA ligase)

Yucca_96
(endolysin, LysM-like)

Yucca_97

Yucca_98

Yucca_99
(major capsid protein)

Yucca_100
(DNA binding domain)

Yucca_101

Yucca_102

Yucca_103

Yucca_104

Yucca_105

Yucca_106
(glycosylase/DNA lyase domain)

Yucca_107

Yucca_108

Yucca_109

Yucca_110

Yucca_111

Yucca_112

Yucca_113

Yucca_114

Yucca_115

Yucca_116

Yucca_117

Yucca_118

Yucca_119
(hydrolase)

Yucca_120
(N-acetyl transferase)

Yucca_121

Yucca_122

Yucca_123

Yucca_124

Yucca_125

Yucca_126
(tail sheath protein)

Yucca_127
(structural protein)

Yucca_128

Yucca_129
(tail assembly chaperone)

Yucca_130
(tail assembly chaperone)

Yucca_131
(tape measure protein)

Yucca_132

Yucca_133

Yucca_134

Yucca_135
(minor tail protien)

Yucca_136

Yucca_137
(minor tail protein)

Yucca_138
(tail lysozyme/baseplate)

Yucca_139
(baseplate J protein)

Yucca_140

Yucca_141

Yucca_142

Yucca_143

Yucca_144
(minor tail protein)

Yucca_145

Yucca_146

Yucca_147

Yucca_148

Yucca_149

Yucca_150

Yucca_151

Yucca_155

Yucca_156
(Peptidyl tRNA hydrolase)

Yucca_170
(HNH endonuclease)

Yucca_172
(minor tail protien)

Yucca_173

Yucca_186

Yucca_187

Yucca_188
(helicase)

Yucca_189

Yucca_190

Yucca_191

Yucca_192

Yucca_193

Yucca_194

Yucca_195

Yucca_196

Yucca_197

Yucca_198
(thymidylate kinase)

Yucca_199
(Aspartate aminotransferase)

Yucca_200
(RNA binding protein (Hfq-like))

Yucca_201

Yucca_202
(AAA-ATPase)

Yucca_203
(DnaB dsDNA helicase)

Yucca_204

Yucca_205
(DnaG DNA primase)

Yucca_206

Yucca_207
(chaperonin, DnaJ-like domain)

Yucca_208
(ssDNA binding protein)

Yucca_209
(DnaE DNA polymerase III (alpha))

Yucca_210
(RF-1 peptide chain release factor)

Yucca_211
(RecA DNA recombinase)

Yucca_212
(Holliday junction resolvase)

Yucca_213

Yucca_214
(HNH endonuclease)

Yucca_215
(RusA resolvase (endonuclease))

Yucca_216

Yucca_217

Yucca_218

Yucca_219

Yucca_220

Yucca_221

Yucca_222

Yucca_225

Yucca_226

Yucca_227

Yucca_228

Yucca_229

Yucca_230

Yucca_231

Yucca_232
(Ro RNA Binding Protein)

Yucca_233

Yucca_234

Yucca_235

Yucca_236

Yucca_237
(hydrolase)

Yucca_238

Yucca_239

Yucca_240
(glycosyltransferase)

Yucca_241

Yucca_242
(glycosyltransferase)

Yucca_243
(galactosyltransferase)

Yucca_244
(nicotinamide riboside transporter)

Yucca_245
(glycosyltransferase)

Yucca_246

Yucca_247

Yucca_248

Yucca_249

Yucca_250
(HNH homing endonuclease)

Yucca_251
(lysin A)

Yucca_252
(holin)

Yucca_253
(lysin B)

Yucca_254
(terminase)

Yucca_255

Yucca_256

Yucca_257

Yucca_258

Yucca_259
(polynucleotide kinase)

Yucca_260

Yucca_261

Yucca_262
(serine/threonine kinase)

Yucca_263

Yucca_264

Yucca_265
(adenylosuccinate synthetase, PurA like)

Yucca_266

Yucca_267

Yucca_268

Yucca_269

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKX721255
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload