CDS 70 - 285
gene="1"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_1"
Original Glimmer call @bp 70 has strength 9.4; Genemark calls start at 70
SSC: 70-285
CP: yes
SCS: Both
ST: SS 70
BLAST-Start: Aligns with Circum YP_009603090 q:1, s:1 100% 5.59016e-45 Gap: 0
LO: yes
RBS: 2.725, -4.170
SIF-BLAST: hypothetical protein, NCBI, Circum, YP_009603090, 100%, 5.59016e-45
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Downstream is: Hypothetical Protein

CDS 734 - 1081
gene="2"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_2"
Original Glimmer call @bp 734 has strength 6.57; Genemark calls start at 734
SSC: 734-1081
CP: YES
SCS: Both
ST: SS 734
BLAST-Start: Aligns with Mudcat YP_009300692 q1:s1 100% 6.31125e-77
Gap: 448
LO: NO
RBS: 2.852, -3.437
SIF-BLAST: Hypothetical Protein NCBI, Mudcat, YP_009300692, 100%, 6.31125e-77
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is: Hypothetical Protein, Downstream is: Hypothetical Protein

CDS 1074 - 1481
gene="3"
product="HNH endonuclease"
function="HNH endonuclease"
locus tag="SEA_BENITOANTONIO_3"
Original Glimmer call @bp 1074 has strength 7.08; Genemark calls start at 1074
SSC: Start = 1074, Stop = 1481. (Forward). CP: Does not contain all GeneMarkHost capacity. SD: ZScore 1.549 is not the highest start score. SCS: Start is called by Glimmer and is called by Genemark. LO: 408 bp is the longest possible ORF. GAP: -8 bp. ST: SS=NA. F: HNH endonuclease. FS: PHDBLAST= . NCBIBLAST= PhageName= HNH endonuclease [Arthrobacter phage Correa] >gb|ASR80455.1| HNH endonuclease [Arthrobacter phage Tribby] >gb|ASR84584.1| HNH endonuclease [Arthrobacter phage Cheesy] >gb|AXH44141.1| HNH endonuclease [Arthrobacter phage KeaneyLin] >gb|QDH47916.1| HNH endonuclease [Arthrobacter phage Xenomorph] >gb|QDM57487.1| HNH endonuclease [Arthrobacter phage JEGGS] >gb|QXO12910.1| HNH endonuclease [Arthrobacter phage Kardesai] >gb|QXO13502.1| HNH endonuclease [Arthrobacter phage GoCrazy], Coverage= 100.0, SubjectRange= 1:135, QueryRange= 1:135, EValue= 8.59288E-97. HHPRED= Accession= 5H0M_A, Description= HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA nicking, HYDROLASE; 1.52A {Geobacillus virus E2}, Probability= 98.8. Coverage= 57.7778, SubjectRange= 50:124, QueryRange= 50:115. CDD= .
Original Glimmer call at bp 1074 has a strength 7.08. GeneMark calls at 1074 SSC: 1074-1481
CP: Yes
SCS: Both
ST: SS 1074
BLAST-Start: Aligns with Correa ASR80065 q1:s1 100% 8.59288e-97 
Gap: -8
LO: Yes
RBS: 1.549, -5.783
F: HNH endonuclease
SIF-BLAST: HNH endonuclease, NCBI, Correa, ASR80065, 100%, 8.59288e-97 
SIF-HHPred: HNH endonuclease; Thermophilic bacteriophage, HNH Endonuclease, DNA nicking, HYDROLASE; 5H0M_A, 57.7778%, 98.8%
SIF-Syn: Upstream is: Hypothetical Protein, Downstream is: endolysin

CDS 1504 - 2430
gene="4"
product="endolysin"
function="endolysin"
locus tag="SEA_BENITOANTONIO_4"
Original Glimmer call @bp 1504 has strength 7.54; Genemark calls start at 1504
SSC: 1504-2430
CP: Yes
SCS: Both
ST: SS 1504 
BLAST-Start: Aligns with Circum YP_009603094 q1:s1 100% 0
Gap: 22
LO: YES
RBS:3.422, -2.458
F: endolysin
SIF-BLAST: endolysin, NCBI, Circum, YP_009603094, 100%, 0
SIF-HHPred: Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]}; d1qwya, 45.4545, 99.2
SIF-Syn: Upstream is: HNH endonuclease, Downstream is: Hypothetical Protein

CDS 2456 - 2824
gene="5"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_5"
Original Glimmer call @bp 2456 has strength 10.38; Genemark calls start at 2456
SSC: 2456-2824
CP: Yes
SCS: Both
ST: SS 2456
BLAST-Start: Aligns with Circum YP_009603095 q1:s1 100% 2.66181e-85
Gap: 25
LO: Yes
RBS:2.91,-3.796
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Circum,YP_009603095, 100%, 2.67657e-85
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is: endolysin, Downstream is: Hypothetical Protein

CDS 2817 - 3824
gene="6"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_6"
Original Glimmer call @bp 2817 has strength 7.66; Genemark calls start at 2817
SSC: 2817-3824
CP: Yes
SCS: Both
ST: SS 2817
BLAST-Start: Aligns with Heisenberger ASR80261 q1:t1 100% 0
Gap: -8
LO: Yes
RBS: 2.996, -2.856
F: Hypothetical Protein
SIF-BLAST:  Hypothetical PRotein, NCBI, Heisenberger, ASR80261, 99.10%, 0
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is: Hypothetical Protein, Down stream is: Terminase

CDS 3839 - 5599
gene="7"
product="terminase"
function="terminase"
locus tag="SEA_BENITOANTONIO_7"
Original Glimmer call @bp 3938 has strength 6.7; Genemark calls start at 3845
SSC: 3938-5599
CP: Yes
SCS: Both-Glimmer
ST: SS 3938
BLAST-Start: Aligns with Arcadia ASR79972 q3:s1 100% 5.59008e-119
Gap: 14
LO: No
RBS: 3.411, -3.004
F: Terminase
SIF-BLAST: Terminase, NCBI ,Arcadia, ASR79973, 100%, 0
SIF-HHPred: Terminase large subunit; genome packaging, bacteriophage, ATPase, nuclease;
6Z6D_A, 90.273%,100%
SIF-Syn: Upstream is: Hypothetical protein, Downstream is: Hypothetical protein

CDS 5608 - 6117
gene="8"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_8"
Original Glimmer call @bp 5608 has strength 10.44; Genemark calls start at 5608
SSC: 5608-6117
CP: Yes
SCS: Both
ST: SS 5608
BLAST-Start: Aligns with Arcadia ASR79973 q1:s1 100% 5.59008e-119
Gap: 8
LO: Yes
RBS: 2.391, -4.096
F: Hypothetical protein
SIF-BLAST: Hypothetical protein, NCBI ,Arcadia, ASR79973, 100%, 5.59008e-119 
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn:  Upstream is: Terminase, Downstream is:  Portal Protein

CDS 6132 - 7442
gene="9"
product="portal protein"
function="portal protein"
locus tag="SEA_BENITOANTONIO_9"
Original Glimmer call @bp 6132 has strength 10.58; Genemark calls start at 6132
SSC: 6132-7442
CP: Yes
SCS: Both
ST: SS 6132
BLAST-Start: Aligns with Mudcat YP_009300699 q1:s1 100% 0
Gap: 14
LO: Yes
RBS: 3.411, -2.016
F: Portal Protein
SIF-BLAST: Portal protein, , Mudcat, YP_009300699, 100%, 0 
SIF-HHPred: Phage portal protein, HK97 family; "neck", "portal", "capsid", "tail tube", VIRUS; 3.58A {Rhodobacter capsulatus}
6TE9_A, 77.9817%, 100%	
SIF-Syn:  Upstream is: Hypothetical protein, Down stream is: Hypothetical Protein

CDS 7439 - 8050
gene="10"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_10"
Original Glimmer call @bp 7439 has strength 10.57; Genemark calls start at 7439
SSC: 7439-8050
CP: Yes
SCS: Both
ST: SS 7439
BLAST-Start: Aligns with Mudcat YP_009300700 q1:s1 100% 1.93982e-144
Gap: -4
LO: YES
RBS:3.091,-2.664
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, Mudcat, YP_009300700, 100%, 1.95057e-144 
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is: Portal Protein, Down stream is: major capsid and protease fusion protein

CDS 8034 - 10007
gene="11"
product="major capsid and protease fusion protein"
function="major capsid and protease fusion protein"
locus tag="SEA_BENITOANTONIO_11"
Original Glimmer call @bp 8034 has strength 6.17; Genemark calls start at 8034
SSC: 8034-10007
CP: Yes
SCS: Both
ST: SS 8034
BLAST-Start: Aligns with Arcadia ASR79976 q1:s1 99.8478% 0
Gap: -17
LO: YES
RBS:3.069 ,-3.553
F: major capsid and protease fusion protein
SIF-BLAST: major capsid and protease fusion protein, Arthrobacter, ASR79976, 99.8478%, 0 
SIF-HHPred: Major capsid protein Rcc01687; "capsid", "jelly roll", "spike", "HK97", VIRUS; 6TSU_B5, 37.5951%, 99.9%
SIF-Syn: Upstream is: Hypothetical Protein, : Downstream is: hypothetical protein

CDS 10027 - 10362
gene="12"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_12"
Original Glimmer call @bp 10027 has strength 5.3; Genemark calls start at 10027
SSC: 10027-10362
CP: Yes
SCS: Both
ST: SS 10027
BLAST-Start: Aligns with Mudcat YP_009300702 q1:s1 100% 7.50774e-74
Gap: 19
LO: Yes
RBS: 1.886, -5.389
F: Hypothetical protein
SIF-BLAST: Hypothetical Protein, Mudcat, YP_009300702, 100%, 7.54937e-74 
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is: major capsid and protease fusion protein, Downstream is: hypothetical protein

CDS 10337 - 10639
gene="13"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_13"
Original Glimmer call @bp 10337 has strength 3.64; Genemark calls start at 10337
SSC: 10337-10639
CP: Yes
SCS: Both
ST: SS 10337
BLAST-Start: Aligns with Mudcat YP_009300703 q1:s1 100% 5.07771e-68
Gap: -26
LO: YES
RBS: 2.583, -3.628
F: hypothetical protein
SIF-BLAST:  hypothetical protein, Mudcat ,YP_009300703, 100%, 5.07771e-68 
SIF-HHPred: DUF806 ; Protein of unknown function (DUF806); PF05657.14	97%, 99%
SIF-Syn: Upstream is: Hypothetical protein, Downstream is: major tail protein

CDS 10652 - 11518
gene="14"
product="major tail protein"
function="major tail protein"
locus tag="SEA_BENITOANTONIO_14"
Original Glimmer call @bp 10652 has strength 11.63; Genemark calls start at 10652
SSC: 10652-11518
CP: Yes
SCS: Both
ST: SS 10652
BLAST-Start: Aligns with Mudcat YP_009300704 q1:s1 100% 0
Gap: 12
LO: Yes
RBS: 3.01, -2.765
F: Major tail protein 
SIF-BLAST: Major tail protein, Mudcat,YP_009300704, 100%, 0 
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is: hypothetical protein, Down stream is:  hypothetical protein

CDS 11544 - 12101
gene="15"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_15"
Original Glimmer call @bp 11544 has strength 4.11; Genemark calls start at 11544
SSC: 11544-12101
CP: Yes
SCS: Both
ST: SS 11544
BLAST-Start: Aligns with Correa ASR80077 q1:s1 100% 1.30574e-134
Gap: 25
LO: Yes
RBS: 3.411,-2.095
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Circum, ASR80077,100%, 1.30574e-134 
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is: Major tail protein, Downstream is: Major Tail Protein

CDS 12121 - 12924
gene="16"
product="major tail protein"
function="major tail protein"
locus tag="SEA_BENITOANTONIO_16"
Original Glimmer call @bp 12121 has strength 4.72; Genemark calls start at 12121
SSC: 12121-12924
CP: Yes
SCS: Both
ST: SS 12121 
BLAST-Start: Aligns with Mudcat YP_009300706 q1:s1 98.5019% 0
Gap: 19
LO: Yes
RBS:1.509, -7.106
F: Major Tail Protein
SIF-BLAST: Major Tail Protein, NCBI, MudCat, YP_009300706, 98.5019%, 0 
SIF-HHPred: Phage tail tube protein; PF06488.14, 68.54% 99.9%
SIF-Syn:  Upstream is: Hypothetical Protein,  Down stream is: hypothetical protein

CDS 12924 - 14645
gene="17"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_17"
Original Glimmer call @bp 12924 has strength 4.83; Genemark calls start at 12924
SSC: 12924-14645
CP: Yes
SCS: both
ST: SS 12924
BLAST-Start: Aligns with Kardesai QXO12924 q1:s1 96.5096%
Gap: -1
LO: Yes
RBS: 2.515, -4.817
F: Hypothetical protein
SIF-BLAST: hypothetical protein, Kardesai, QXO12924, 96.5096%, 0 
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is: Major Tail Protein, Downstream is: minor tail protein

CDS 14727 - 16184
gene="18"
product="minor tail protein"
function="minor tail protein"
locus tag="SEA_BENITOANTONIO_18"
Original Glimmer call @bp 14766 has strength 3.44; Genemark calls start at 14766
SSC: 14766-16184
CP: Yes
SCS: Both
ST: SS 14766 
BLAST-Start: Aligns with Circum YP_009603108 q1:s1 94.0678% 0
Gap: 81
LO: Yes
RBS:1.624, -6.397
F: minor tail protein
SIF-BLAST: minor tail protein, YP_009603108, 94.0678% , 0
SIF-HHPred: Veillonella parvula d4rw0a1, 60.4124%, 99.7%
SIF-Syn: Upstream hypothetical protein, downstream hypothetical protein

CDS 16181 - 16888
gene="19"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_19"
Original Glimmer call @bp 16181 has strength 7.17; Genemark calls start at 16181
SSC: 16181-16888
CP: Yes
SCS: Both
ST: SS 16181
BLAST-Start: Aligns with Tribby, ASR80471, q1:s1, 96.1702% 6.19049e-157
Gap: -4
LO: Yes
RBS: 2.054, -5.607
F: hypothetical protein
SIF-BLAST: hypothetical protein, Tribby, ASR80471, 96.1702% 6.19049e-157
SIF-HHPred: b.29.1.0 (A:868-1088) automated matches {Clostridium botulinum [TaxId: 1491]}, d2vxra1, 32.766%, 98.8%
SIF-Syn:  Upstream is minor tail protein, Downstream is hypothetical protein

CDS 16909 - 17289
gene="20"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_20"
Original Glimmer call @bp 16909 has strength 2.54; Genemark calls start at 16969
SSC: 16909-17289
CP: Yes
SCS: Both-Glimmer
ST: SS 16909
Gap: 20
Blast-Start: Aligns with Mudcat YP_009300709 q1:s1 100% 0 
LO: Yes
RBS: 2.48, -3.837
F: Hypothetical protein
SIF-BLAST: hypothetical protein, Mudcat, YP_009300709, 100%, 0
SIF-HHPred: Minor_capsid_2 ; Minor capsid protein; 76.1905%, 99.4%
SIF-Syn: Upstream is hypothetical protein, Downstream is tape measure protein

CDS 17286 - 21764
gene="21"
product="tape measure protein"
function="tape measure protein"
locus tag="SEA_BENITOANTONIO_21"
Original Glimmer call @bp 17286 has strength 7.58; Genemark calls start at 17286
SSC: 17286-21764
CP: Yes
SCS: Both
ST: SS 17286
BLAST-Start: Aligns with Mudcat YP_009300710 q1:s1 98.5255% 0
Gap: -4
LO: No
RBS: 2.804 -3.323
F: tape measure protein
SIF-BLAST: tape measure protein NCBI Mudcat YP_009300710 100% 0
SIF-HHPred: Tape Measure Protein, gp57; phage tail, tail tip, tape measure protein, VIRAL PROTEIN; 3.7A {Staphylococcus virus 80alpha}; 6V8I_AF, 60.7239%, 99.6%
SIF-Syn: Upstream is hypothetical protein, Downstream is minor tail protein

CDS 21764 - 22615
gene="22"
product="minor tail protein"
function="minor tail protein"
locus tag="SEA_BENITOANTONIO_22"
Original Glimmer call @bp 21764 has strength 8.65; Genemark calls start at 21764
SSC: 21764-22615
CP: Yes
SCS: Both
ST: SS 21764
BLAST-Start: Aligns with Mudcat YP_009313711 q1:s1 100% 0
Gap: -1
LO: Yes
RBS: 2.984 -4.122
F: minor tail protein
SIF-BLAST: minor tail protein NCBI Mudcat YP_009313711 100% 0
SIF-HHPred: Distal Tail Protein, gp58; phage tail, tail tip, tape measure protein, VIRAL PROTEIN; 6V8I_BD, 97.8799%, 100%
SIF-Syn: Upstream is tape measure protein, Downstream is minor tail protein

CDS 22616 - 23677
gene="23"
product="minor tail protein"
function="minor tail protein"
locus tag="SEA_BENITOANTONIO_23"
Original Glimmer call @bp 22616 has strength 8.48; Genemark calls start at 22616
SSC: 22616-23677
CP: Yes
SCS: Both
ST: SS 22616
BLAST-Start: Aligns with Mudcat YP_009300712 q1:s1 100% 0
Gap: 0
LO: Yes
RBS: 1.627 -5.562
F: minor tail protein
SIF-BLAST: minor tail protein NCBI Mudcat YP_009300712 100% 0
SIF-HHPred: Protein gp18; NP_465809.1, prophage tail protein gp18; 3GS9_A, 98.8669%, 99.9%
SIF-Syn: Upstream is minor tail protein, Downstream is hypothetical protein

CDS 23696 - 24157
gene="24"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_24"
Original Glimmer call @bp 23696 has strength 4.77; Genemark calls start at 23711
SSC: 23696-24157
CP: Yes
SCS: Both
ST: SS 23696
BLAST-Start: Aligns with Tribby ASR80476 q1:s1 98.7097% 5.83625e-105
Gap: 18
LO: Yes
RBS: 2.558 -3.820
F: hypothetical protein
SIF-BLAST: hypothetical protein NCBI Tribby ASR80476 98.7097% 5.83625e-105
SIF-HHPred: NFK no matches with probability above 90%
SIF-Syn: Upstream is minor tail protein, Downstream is hypothetical protein

CDS 24161 - 24442
gene="25"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_25"
Original Glimmer call @bp 24161 has strength 5.77; Genemark calls start at 24161
SSC: 24161-24442
CP: Yes
SCS: Both
ST: SS 24161
BLAST-Start: Aligns with Mudcat YP_009300714 q1:s1 100% 1.94823e-57
Gap: 3
LO: Yes
RBS: 2.825 -3.139
F: hypothetical protein
SIF-BLAST: hypothetical protein NCBI Mudcat YP_009300714 100% 1.94823e-57
SIF-HHPred: LapA_dom ; Lipopolysaccharide PF06305.14 51.6129% 96.5%
SIF-Syn: Upstream is hypothetical protein, Downstream is a hypothetical protein

CDS 24452 - 24868
gene="26"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_26"
Original Glimmer call @bp 24452 has strength 10.78; Genemark calls start at 24452
SSC: 24452 - 24868
CP: Yes
SCS: Both
ST: SS 24452
Blast-Start: Aligns with Arcadia ASR79991 q:1s:1 100% 3.2e-92 
Gap: 9
LO: Yes
RBS: 2.48 ; -3.837
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Arcadia, ASR79991, 100%, 3.27794e-92
SIF-HHPred: Phage_holin_Dp1; Putative phage Colin Dp-1, PF16938.8, 44.2029%, 99.9%

CDS 24910 - 25200
gene="27"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_27"
Original Glimmer call @bp 24910 has strength 6.96; Genemark calls start at 24910
SSC: 24910-25200
CP: Yes
SCS: Both
ST: SS 24910
Blast-Start: aligns with Cheesy ASR84608 q1:s1 100% 4.54717e-62 
Gap: 41
LO: No
RBS: 3.411, -2.034
F: hypothetical protein
SIF-Blast: Hypothetical Protein, NCBI, Cheesy, ASR84608, 100%, 4.54717e-62
SIF-HHPred: NFK, no matches with a probability over 90%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 25362 - 25595
gene="28"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_28"
Original Glimmer call @bp 25362 has strength 9.75; Genemark calls start at 25362
SSC: 25362-25595
CP: yes
SCS: Both
ST: SS 25362
Blast-Start: aligns with KeaneyLin AXH44164 q1:s1 100% 2.26917e-62
Gap: 161, no gene in gap
LO:	Yes
RBS: 3.311, -2.156
F: hypothetical protein
SIF-Blast: hypothetical protein, NCBI, KeaneyLin, AXH44164, 100%, 2.26917e-62
SIF-HHPred: NFK, no matches with a probability over 90%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 25690 - 25890
gene="29"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_29"
Original Glimmer call @bp 25690 has strength 10.3; Genemark calls start at 25690
SSC: 25690 - 25890
CP: Yes
SCS: Both
ST: SS 25690
Blast-Start: Aligns with Arcadia ASR79994 q1:s1 100%, 1.77486e-36
Gap: 94
LO: yes
RBS: 3.422, -1.931
F: hypothetical protein
SIF-Blast: Hypothetical Protein, NCBI, Arcadia, ASR79994, 100%, 1.7847e-36
SIF-HHPred: NFK, no matches with a probability over 90%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 25960 - 26199
gene="30"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_30"
Original Glimmer call @bp 25963 has strength 3.86; Genemark calls start at 25960
SSC: 25960 - 26199
CP: Yes
SCS: Both-GM
ST: SS 25963
Blast-Start: Aligns with Correa ASR80090 q:1s:1 100% 1.35129e-49
Gap: 69
LO: Yes
RBS: 2.48, -3.837
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Correa, ASR80090, 100%, 1.31059e-49
SIF-HHPred: NKF, no matches with a probability above 90%

CDS 26199 - 26399
gene="31"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_31"
Original Glimmer call @bp 26199 has strength 8.63; Genemark calls start at 26199
SSC: 26199-26399
CP: Yes
SCS: both
ST: SS 26199
BLAST-Start: Aligns with Arcadia, ASR79996, q1 s1 100% 1.55956e-38
Gap: -1
LO: Yes
RBS: 3.069 -2.645
F: hypothetical protein
SIF-BLAST:  hypothetical protein Arcadia, NCBI, ASR79996, 100% 1.55956e-38
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 26389 - 26607
gene="32"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_32"
Original Glimmer call @bp 26389 has strength 6.53; Genemark calls start at 26389
SSC: 26389-26607
CP: Yes
SCS: Both
ST: SS 26389
BLAST-Start: Aligns with Arcadia ASR79997 q1 s1 100% 2.3682e-44
Gap: -11
LO: yes
RBS: 3.411 -1.954
F: hypothetical protein
SIF-BLAST: hypothetical protein, NCBI, Arcadia, ASR79997, 100% 2.3682e-44
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 26647 - 26835
gene="33"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_33"
Original Glimmer call @bp 26647 has strength 9.67; Genemark calls start at 26647
SSC: 26647- 26835
CP: Yes
SCS: Both
ST: SS 26647
BLAST-Start: Aligns with Arcadia ASR79998 q1 s1 100% 4.93985e-35
Gap: 39
LO: Yes
RBS: 3.311 -2.236
F: hypothetical protein
SIF-BLAST: hypothetical protein NCBI Arcadia  ASR79998, 100% 4.93985e-35
SIF-HHpred: NKF, no matches with a probability above 90%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 26904 - 27125
gene="34"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_34"
Original Glimmer call @bp 26904 has strength 9.07; Genemark calls start at 26904
SSC: 26904-27125
CP: Yes
SCS: Both
ST: SS 26904
Blast-Start: Aligns with Circum YP_009603125 q:1s:1 100% 2.96167e-40
Gap: 68
LO: Yes
RBS: 3.422 -1.993
F: hypothetical protein
SIF-BLAST: Hypothetical Protein, NCBI, Circum, YP_009603125, 100%, 2.96167e-40
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream is a hypothetical protein, downstream is a hypothetical protein

CDS 27135 - 27455
gene="35"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_35"
Original Glimmer call @bp 27135 has strength 4.59; Genemark calls start at 27135
SSC: 27135-27455
CP: Yes
SCS: Both
ST: SS 27135
BLAST-Start: Aligns with Mudcat YP_009300722 q1 s1 100% 8.65184e-60
Gap: 9
LO: no
RBS: 3.422 -2.981
F: hypothetical protein
SIF-BLAST: Hypothetical protein, NCBI, Mudcat, YP_009300722, 100%, 8.65184e-60
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 27457 - 27666
gene="36"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_36"
Original Glimmer call @bp 27457 has strength 7.85; Genemark calls start at 27457
SSC: 27457 - 27666
CP: Yes
SCS: Both
ST: SS 27457
Blast-Start: Aligns with KeaneyLin AXH44173 q:1s:1 100% 3.45607e-41
Gap: 1
LO: Yes
RBS: 2.674, -3.508
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, KeaneyLin, AXH44173, 100%, 3.45607e-41
SIF-HHPred: DUF883_C; DUF883 C-terminal glycine zipper region, PF19029.3, 40.5797% 98.8%
SIG-SYN: Upstream is Hypothetical Protein, Downstream is Hypothetical Protein

CDS 27761 - 27982
gene="37"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_37"
Original Glimmer call @bp 27761 has strength 6.19; Genemark calls start at 27761
SSC: 27761 - 27982
CP: Yes
SCS: Both
ST: SS 27761
Blast-Start: Aligns with Mudcat YP_009300725 q:1s:1 100% 1.97917e-42
Gap: 94
LO: Yes
RBS: 3.344, -2.090
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Mudcat, YP_009300725, 100%, 1.97917e-42
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is Hypothetical Protein, Downstream is Hypothetical Protein

CDS 28046 - 28417
gene="38"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_38"
Genemark calls start at 28046
SSC: 28046-28417
CP: Yes
SCS: GM
ST: SS 28046
Blast-Start: Aligns with GoCrazy, AXH44175, Q1:S1, 100%, 3.21109e-75
Gap: 9
LO: 372
RBS: 2.364, -4.151
F: Hypothetical protein 
SIF-BLAST: Hypothetical protein SEA_KEANEYLIN_37, AXH44175, 100%, 3.2289e-75
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is hypothetical protein, downstream is acetyltransferase

CDS 28407 - 28721
gene="39"
product="acetyltransferase"
function="acetyltransferase"
locus tag="SEA_BENITOANTONIO_39"
Original Glimmer call @bp 28086 has strength 3.34; Genemark calls start at 28407
SSC: 28407 - 28721
CP: yes
SCS: GM
ST: SS 28086
Blast-Start: Aligns with Correa, ASR80098, q1:s1, 99.0385%, 5.63125e-69
Gap: -11
LO: No
RBS: 2.592, -3.752
F: acetyltransferase 
SIF-Blast: acetyltransferase , NCBI, Correa, ASR80098, 99.0385%, 5.63125e-69
SIF-HHPred: 
N-acetyltransferase; Toxin, acetyltransferase, TRANSFERASE; 	7C4F_A, 81.7308%, 99.3%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 28872 - 29180
gene="40"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_40"
Original Glimmer call @bp 28872 has strength 6.47; Genemark calls start at 28872
SSC: 28872 - 29180
CP: Yes
SCS: Both
ST: SS 28872
Blast-Start: Aligns with NapoleonB; QFP95008; 100%, 1.17986e-69
RBS: 3.411, -1.954
Gap: 150
LO: Yes
F: Hypothetical Protein
SIF-Blast: hypothetical protein, NapoleonB, NCBI, QFP95008, 100%, 1.17986e-69
SIF-HHPred: PGDYG ; PGDYG protein, PF14083.9, 95.8%, 92.1569%,
SIF-Syn: upstream is acetyltransferase, downstream is hypothetical protein

CDS 29181 - 29297
gene="41"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_41"
Original Glimmer call @bp 29181 has strength 8.19; Genemark calls start at 29181
SSC: 29181 - 29297
CP: Yes
SCS: Both
ST: SS 29181
BLAST-Start: Aligns with Mudcat, YP_009300728, q:1s:1, 100%, 5.87038e-18
GAP: 0
LO: Yes
RBS: 3.069, -2.725
Function: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Mudcat, YP_009300728, 100%, 5.87038e-18
SIF-HHpred: NKF, no matches with a probability above 90%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 29294 - 30052
gene="42"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_42"
Original Glimmer call @bp 29294 has strength 9.41; Genemark calls start at 29294
SSC: 29294 - 30052
CP: Yes
SCS: Both
ST: SS 29294
BLAST-Start: Aligns with phage KeaneyLin, AXH44179, Q1:S1, 100%, 0
Gap: -4
LO: Yes
RBS: 2.863, -3.969
F: hypothetical protein
SIF-BLAST: hypothetical protein KeaneyLin, AXH44179, 100%, 0 
SIF-HHPred: DUF6353 ; Family of unknown function (DUF6353), PF19880.2, 100, 93.254%
SIF-Syn: upstream is hypothetical protein, downstream is hypothetical protein

CDS 30067 - 30432
gene="43"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_43"
Original Glimmer call @bp 30067 has strength 10.68; Genemark calls start at 30067
SSC: 30067-30432
CP: Yes
SCS: Both
ST: SS 30067
BLAST-Start: Aligns with Heisenberger, ASR80297, q1:s1 100% 5.4017e-84
GAP: 14
LO: Yes
RBS: 2.228, -4.347
F: Hypothetical protein
SIF-BLAST: Hypothetical protein, Heisenberger, ASR80297, 100%, 5.43165e-84
SIF-HHPred: DUF1599 ; Nucleotide modification associated domain 1, PF07659.14, 59.5041%, 99.5
SIF-Syn: Upstream is hypothetical protein, downstream is hypothetical protein

CDS 30416 - 30736
gene="44"
product="helix-turn-helix DNA binding domain"
function="helix-turn-helix DNA binding domain"
locus tag="SEA_BENITOANTONIO_44"
Original Glimmer call @bp 30416 has strength 2.05; Genemark calls start at 30464
SSC: 30416 - 30736
CP: Yes
SCS: Both-GL
ST: SS 30416
Gap: -17
LO: No
RBS: 1.471, -5.941
F: helix-turn-helix DNA-binding domain protein
Blast start: aligns with Mudcat YP_009300731 100% q1:s1 2.25589e-70
SIF BLAST: helix-turn-helix NCBI Mudcat YP_009300731 100% 2.25589e-70
SIF HHpred: helix-turn-helix DNA-binding domain protein, YP_009300731, 47.1698%, 97.8%
SIF-Syn: Upstream is hypothetical protein, downstream is hypothetical protein

CDS 30769 - 30978
gene="45"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_45"
Original Glimmer call @bp 30784 has strength 4.76; Genemark calls start at 30784
SSC 30769-30978	
CP : Yes
SCS : Both-GM
ST : SS 30784
BLAST- Start: Aligns Correa, ASR80105 Q6:S1, 92.7536%, 2.19321e-36
GAP: 32
LO: yes
RBS: 2.138, -5.356
F: Hypothetical protein
SIF BLAST:  Hypothetical protein, NCBI, Correa, ASR8010, 100%, 2.19321e-36
SIF HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is hypothetical protein, downstream is hypothetical protein

CDS 31051 - 31407
gene="46"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_46"
Original Glimmer call @bp 31051 has strength 4.69; Genemark calls start at 31051
SSC: 31051-31407
CP: yes
SCS: both
ST: SS 31051
Blast-Start: Aligns with Kardesai, QXO12955, q1:s1, 100%, 2.27307e-82
Gap: 72
LO: yes
RBS: 3.411, -1.954
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Kardesai, QXO12955, 100%, 2.27307e-82
SIF-HHPred: DUF6275 ; Family of unknown function, PF19791.2, 66.1017%, 100%
SIF-Syn: Upstream is hypothetical protein, downstream is hypothetical protein

CDS 31423 - 31992
gene="47"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_47"
Original Glimmer call @bp 31423 has strength 13.94; Genemark calls start at 31423
SSC: 31423-31992
CP: Yes
SCS: Both
ST: SS 31423 
BLAST-Start: Aligns with Napoleon QFP95016 q1:s1 100% 1.40877e-134
Gap: 15
LO: yes
RBS: 2.228 -4.347
F: hypothetical protein
SIF-BLAST: hypothetical protein, NCBI, Arthrobacter phage Napoleon QFP95016 100% 1.40877e-134
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is hypothetical protein, downstream is hypothetical protein

CDS 32116 - 32424
gene="48"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_48"
Original Glimmer call @bp 32116 has strength 9.9; Genemark calls start at 32116
SSC: 32101-32424
Cp: Yes
Scs: Both
St: SS 32116
Blast-start: aligns with NapoleonB, QFP95017, q1:s1, 100%, 1e-50
Gap: 108
LO: No
RBS: 3.311, -2.236
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, NapoleonB, QFPq5017, 100%, 1.22824e-65
SIF-HHpred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is hypothetical protein, downstream is hypothetical protein

CDS 32425 - 32616
gene="49"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_49"
Original Glimmer call @bp 32425 has strength 6.22; Genemark calls start at 32425
SSC: 32425 - 32616
CP: no
SCS: Both
ST: SS 32425
Blast-Start: aligns with Mudcat, YP_009300736, q1:s1, 100% 6.3358e-39
GAP: 0
LO: yes
RBS: 2.598, -3.598
F: unknown 
SIF BLAST: Hypothetical, NCBI, Mudcat, YP_00930073, 100, 6.3358e-39
SIF HHpred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is hypothetical protein, downstream is hypothetical protein

CDS 32641 - 32775
gene="50"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_50"
Original Glimmer call @bp 32641 has strength 11.71; Genemark calls start at 32641
SSC: 32641-32775
CP: yes
SCS: both
ST: SS 32641
Blast start: Aligns with Circum, YP_009643142, q1:s1, 100%, 3.64519e-27
YP_009603142
Gap: 9
LO: No
RBS: 3.411, -2.034
F: hypothetical protein 
SIF-BLAST: hypothetical protein , NCBI, Circum, YP_009603142, 89.7959, 3.89719e-23
SIF-HHPred: NFK, no matches with a probability over 90%
SIF-Syn: Upstream is hypothetical protein, Downstream is hypothetical protein

CDS 32772 - 32870
gene="51"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_51"
Genemark calls start at 32772
SSC: 32772 - 32870
CP: Yes
SCS: GM
ST: SS 32772
BLAST-Start: Aligns with Tribby ASR80504 q1:s1 96.9697% 2.53339e-12
Gap: -4
LO: Yes
RBS: 3.411 -2.606
F: hypothetical protein
SIF-BLAST: hypothetical protein, NCBI, Arcadia, YP_009300738, Q1:S1, 100%, 2.72667e-12
SIF-HHPred: DUF4234 ; Domain of unknown function (DUF4234); PF14018.9;  68.75%, 96.7%
SIF-Syn: upstream is unknown, downstream is unknown

CDS 32880 - 33569
gene="52"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_52"
Original Glimmer call @bp 32880 has strength 11.39; Genemark calls start at 32880
SSC: 32880 - 33569
CP: Yes
SCS: Both 
ST: SS 32880
BLAST-Start: Aligns with Circum YP_009603144 q1:s1 100% 9.61941e-167
Gap: 9
LO: Yes
RBS: 2.863 -3.589
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Circum, YP_009603144, 100%, 9.61941e-167
SIF-HHPred: DUF6353 ; Family of unknown function (DUF6353); PF19880.2, 30.5677%, 91.4%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 33562 - 33780
gene="53"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_53"
Genemark calls start at 33562
SSC: 33562-33780
CP: Yes
SCS: GM
ST: SS 33562
BLAST-Start: Aligns with Circum, YP_009603145, Q1:S1, 100%, 2.61428e-44
Gap: -8
LO: No
RBS: 1.409, -6.354
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Circum, YP_009603145, 100%, 2.61428e-44
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream has unknown function, downstream has unknown function

CDS 33798 - 33923
gene="54"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_54"
Original Glimmer call @bp 33798 has strength 1.73; Genemark calls start at 33798
SSC: 33798-33923
CP: Yes
SCS: Both
ST: SS 33798
BLAST-Start: Aligns with KeaneyLin, AXH44192, Q1:S1, 100%, 1.4649e-20
Gap: 17
LO: True
RBS: 2.264, -4.927
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, KeaneyLin, AXH44192, 100%, 1.4649e-20
SIF-HHPred: Stork_head ; Winged helix, PF10264.12, 84.2%, 95.1219%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 33923 - 34216
gene="55"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_55"
Original Glimmer call @bp 33923 has strength 2.96; Genemark calls start at 33923
SSC: 33923 - 34216
CP: Yes
SCS: Both 
ST: SS 33923
BLAST-Start: Aligns with NaploeonB QFP95024 q:1 s:1 100% 1.93088e-56
Gap: -1
LO: yes
RBS: 2.228, -4.427
Function: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, NapoleonB, QFP95024, 100% 1.93088e-56 
SIF HHPred: Cytochrome bc1 core subunit 2; d3cx5b1; 88.6598%: 92.2%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 34216 - 35127
gene="56"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_56"
Original Glimmer call @bp 34216 has strength 8.7; Genemark calls start at 34216
SSC: 34216 - 35127
CP: Yes
SCS: Both 
ST: SS 34216
Blast-Start: Aligns with KeaneyLin, AXH44194, Q1, S1, 100%, 0
Gap: -1
LO: Yes
RBS: 3.169, -2.505
F: hypothetical protein
SIF-Blast: hypothetical protein, NCBI, KeaneyLin, AXH44194, 100%, 0
SIF-HHPred: DUF6353 ; Family of unknown function, PF19880.2, 91.4191%, 100%
SIF-Syn: upstream has unknown function, downstream has unknown function

CDS 35157 - 35513
gene="57"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_57"
Original Glimmer call @bp 35157 has strength 10.72; Genemark calls start at 35157
SSC: 35157-35513
CP: Yes
SCS: Both
ST: SS 35157
BLAST-Start: Aligns with NapoleonB, QFP95026, Q1, S1, 95.7627%, 3e-65
Gap: 29
LO: yes
RBS: 2.38, -4.102
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, NapoleonB, QFP95026, 95.7627%, 8.86526e-74
SIF-HHPred: NKF, no matching probability over 90%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 35510 - 36310
gene="58"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_58"
Original Glimmer call @bp 35510 has strength 11.66; Genemark calls start at 35510
SSC: 35510-36310
CP: yes 
SCS: Both
ST: SS 35510
BLAST-Start: Aligns with Mudcat, YP_009300745, Q1, S1, 100, 0
Gap: -4
LO: Yes
RBS: 2.273, -4.398
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Mudcat, YP_009300745, 100%, 0
SIF-HHPred: Lipopolysaccharide assembly protein A domain, PF06305.14, 15.0376% 92.8%
SIF-Syn: upstream has unknown function, downstream has unknown function

CDS 36300 - 36860
gene="59"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_59"
Original Glimmer call @bp 36300 has strength 7.21; Genemark calls start at 36300
SSC: 36300-36860
CP: Yes
SCS: Both
ST: SS 36300
BLAST-Start: Aligns with Mudcat, YP_009300746, 1, 1, 100%, 1.14441e-134
Gap: -11
LO: No
RBS: 3.244, -3.199
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Mudcat, YP_009300746, 100%, 1.14441e-134
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 36884 - 40831
gene="60"
product="DNA primase/polymerase"
function="DNA primase/polymerase"
locus tag="SEA_BENITOANTONIO_60"
Original Glimmer call @bp 36884 has strength 6.09; Genemark calls start at 36929
SSC: 36884-40831
CP-yes
SCS-Glimmer
ST: SS 36884
F: DNA primase/polymerase
BLAST: Aligns with Arthrobacter phage Kardesai: QXO12969: q:1, s: 1:100%: 0
Gap: 23
Lo: Yes
RBS: 2.177, -4.467
SIF BLAST: DNA primase/polymerase, NCBI, Kardesai, QXO12969, 99.924
SIF HHPRED: NKF, no matches with a probability above 90%
SIF-Syn:  upstream has hypothetical protein, downstream has hypothetical protein

CDS 40828 - 41037
gene="61"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_61"
Original Glimmer call @bp 40858 has strength 3.96; Genemark calls start at 40858
SSC: 40828-41037
CP: Yes
SCS: Both
ST: SS 40858
BLAST-Start: Aligns with Kardesai, QXO12970, Q:1, S:1, 100%, 1.18187e-44
Gap: 26
LO: No
RBS: 1.49, -6.747
F: Hypothetical protein
SIF-BLAST: Hypothetical Protein, NCBI, Kardesai, QXO12970, 100%, 1.18187e-44
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream DNA primase/polymerase, downstream has hypothetical protein

CDS 41128 - 41310
gene="62"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_62"
Genemark calls start at 41128
SSC: 41128-41310
CP: Yes
SCS: GM
ST: SS 41128
BLAST-Start: Aligns with NapoleonB, QFP95033, Q:1, S:1, 100%, 4.51833e-34
Gap: 90
LO: No
RBS: 2.128, -4.900
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, NapoleonB, QFP95033, 100%, 4.51833e-34
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream Hypothetical Protein, downstream Hypothetical Protein

CDS 41457 - 41585
gene="63"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_63"
Original Glimmer call @bp 41457 has strength 8.78; Genemark calls start at 41457
SSC: 41457-41585
CP: Yes
SCS: Both
ST: SS 41457
BLAST START: Aligns with Mudcat,YP_009300751, q1, s1 : 100%, 7.11547e-20
Gap: 146
Lo: yes
RBS:3.422, -2.011
F: Unknown, Hypothetical protein
SIF BLAST: Hypothetical protein BI184_gp62, NCBI, Mudcat, YP_009300751,100%
SIF HHPRED: NKF, no matches with a probability above 90%
SIF-Syn: upstream has Hypothetical protein , downstream has Hypothetical protein

CDS 41587 - 41958
gene="64"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_64"
Original Glimmer call @bp 41587 has strength 9.53; Genemark calls start at 41587
SSC:41587-41958
CP: Yes
SCS: Both
ST: SS 41587
BLAST-Start: Aligns with Kardesai, QXO12974 Q1, S1, 100%, 3.85728e-81
Gap: 1
LO: No
RBS: 2.228, -4.874
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Kardesai, QXO12974, 100%, 3.85728e-81
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream has unknown function, downstream has unknown function

CDS 42012 - 42506
gene="65"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_65"
Original Glimmer call @bp 42012 has strength 8.55; Genemark calls start at 42012
SSC: 42012-42506
CP: Yes
SCS: Both
ST: SS 42012
BLAST-Start: Aligns with Mudcat YP_009300753, Q1, S1, 100%, 1.29462e-117
Gap: 53
LO: Yes
RBS: 1.98, -4.849
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Mudcat, YP_009300753, 100%, 1.29462e-117
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 42507 - 42785
gene="66"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_66"
Original Glimmer call @bp 42507 has strength 4.32; Genemark calls start at 42507
SSC: 42507-42785
CP: Yes
SCS: Both
ST: SS 42507
BLAST-Start: Aligns with Mudcat YP_009300754, Q:1, S:1, 100%, 5.40748e-60
Gap: 53
LO: Yes
RBS: 1.868, -5.137
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Mudcat, YP_009300754, 100%, 5.40748e-60
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 42799 - 43368
gene="67"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_67"
Original Glimmer call @bp 42799 has strength 8.13; Genemark calls start at 42799
SSC: 42799-43368
CP: Yes
SCS: Both
ST: SS 42799
BLAST-Start: Aligns with Circum YP_009603160, Q:1, S:1, 100%, 6.20355e-139
Gap: 13
LO: Yes
RBS: 2.48, -3.917
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Circum, YP_009603160, 100%, 6.20355e-139
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream has unknown function, downstream has unknown function

CDS 43369 - 43737
gene="68"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_68"
Original Glimmer call @bp 43369 has strength 10.59; Genemark calls start at 43369
SSC: 43369-43737
CP: Yes
SCS: Both
ST: SS 43369
BLAST-Start: Aligns with NapoleonB QFP95039, Q1, S1, 100%, 2.38544e-81
Gap: 0
LO: Yes
RBS: 2.704, -3.384
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, NapoleonB, QFP95039, 100%, 2.38544e-81
SIF-HHPred: PGDYG protein, PF14083.9, 69.6721% 99.2%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 43827 - 44105
gene="69"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_69"
Original Glimmer call @bp 43827 has strength 4.04; Genemark calls start at 43827
SSC: 43827-44105
CP: Yes
SCS: Both
ST: SS 43827
BLAST-Start: Aligns with NapoleonB QFP95039, Q:1, S:1, 100%, 2.38544e-81
Gap: 89
LO: Yes
RBS: 2.924, -3.020
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, NapoleonB, QFP95039, 100%, 2.38544e-81
SIF-HHPred: PGDYG PF14083.9, 	93.4783%, 99.2%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 44114 - 44425
gene="70"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_70"
Original Glimmer call @bp 44114 has strength 6.76; Genemark calls start at 44114
SSC: 44114-44425
CP: Yes
SCS: Both
ST: SS 44114
BLAST-Start: Aligns with Mudcat YP_009300757, Q:1, S:1, 100%, 2.18687e-69
Gap: 8
LO: Yes
RBS: 1.691, -5.513
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Mudcat, YP_009300757, 100%, 2.18687e-69
SIF-HHPred: PGDYG protein, PF14083.9, 83.4951% 99.2%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 44425 - 44739
gene="71"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_71"
Original Glimmer call @bp 44425 has strength 6.62; Genemark calls start at 44425
SSC: 44425-44739
CP: Yes
SCS: Both
ST: SS 44425
BLAST-Start: Aligns with Circum YP_009603164, Q:1, S:1, 100%, 1.37876e-68
Gap: -1
LO: Yes
RBS: 2.505, -3.867
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Circum YP_009603164, 100%, 1.37876e-68
SIF-HHPred: PGDYG protein, PF14083.9, 75.9615% 97.5%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 44749 - 44949
gene="72"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_72"
Original Glimmer call @bp 44749 has strength 2.99; Genemark calls start at 44749
SSC: 44749-44949
CP: Yes
SCS: Both
ST: SS 44749
BLAST-Start: Aligns with Circum YP_009603165, 1, 1, 100%, 7.61967e-42
Gap: 9
LO: Yes
RBS: 2.391, -4.016
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Circum YP_009603165, 100%, 7.61967e-42
SIF-HHPred: Small integral membrane protein, PF10031.12, 39.3939%, 90.9%
SIF-Syn: upstream has Hypothetical Protein, downstream has Hypothetical Protein

CDS 44974 - 45246
gene="73"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_73"
Original Glimmer call @bp 44974 has strength 2.4; Genemark calls start at 44974
SSC: 44974-45246
CP: Yes
SCS: Both
ST: SS 44974
BLAST-Start: Aligns with Mudcat YP_009300760, 1, 1, 100%, 3.24245e-61
Gap: 24
LO: Yes
RBS: 2.653, -4.140
F: Hypothetical Protein
SIF-Blast: Hypothetical Protein, NCBI, Mudcat YP_009300760, 100%, 3.24245e-61
SIF-HHPred: NFK, No matching probability over 90%
SIF-Syn: upstream has Hypothetical Protein, downstream has HNH endonuclease

CDS 45340 - 45852
gene="74"
product="HNH endonuclease"
function="HNH endonuclease"
locus tag="SEA_BENITOANTONIO_74"
Original Glimmer call @bp 45340 has strength 2.87; Genemark calls start at 45340
SSC: 45268-45852
CP: yes
SCS: Both
ST : SS  45340
BLAST- Aligns with Mudcat, YP_009300761, Q1:S1, 100%, 3.11601e-120
GAP: 93
LO: No
RBS: 2.48 -3.900
F: HNH endonuclease
SIF BLAST: HNH endonuclease,NCBI,Mudcat,100%,3.11601e-120
SIF HHPred: HNH homing endonuclease, 1U3E_M, 94.7059%, 100%
SIF-Syn: Upstream is Hypothetical Protein,  downstream is Hypothetical Protein

CDS 45818 - 45943
gene="75"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_75"
Original Glimmer call @bp 45818 has strength 3.49
SSC: 45818-45943
CP: Yes
SCS: Glimmer
ST: SS 45818
Blast: hypothrtical protein, QXO12984, Q:1 , S:1 , 100%, 4.39704e-21
Gap: -35
LO: no
RBS: 1.483, -5.995
F:  hypothetical protein 
SIF-Blast: hypothetical protein, NCIB, Kardesai, QXO12984, 100%, 4.39704e-21
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn:Upstream: HNH endonuclease,  downstream: hypothetical protein

CDS 45943 - 46230
gene="76"
product="Hypothetical protein"
function="Hypothetical protein"
locus tag="SEA_BENITOANTONIO_76"
Original Glimmer call @bp 45943 has strength 3.76; Genemark calls start at 45943
SSC: 45943-46230
CP: Yes
SCS: Both
ST: SS 45943
BLAST:  hypothetical protein Keaneylin, AXH44212, Q:1, S:1, 98.9474%, 2.58476e-62
Gap:-1
LO: True
RBS: 3.311, -3.206
F:  hypothetical protein
SIF-Blast: KeaneyLin, NCIB, AXH44212, 98.9474, 2.58476e-62
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream: Hypothetical protein, Downstream:  Hypothetical Protein

CDS 46234 - 46365
gene="77"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_77"
Original Glimmer call @bp 46234 has strength 2.49
SSC: 46234-46365
CP: Yes
SCS: Glimmer
ST: SS 46234
BLAST-Start: Aligns with KeaneyLin, AXH44213, Q:1 S:2, 5.91908e-22
Gap: 3
LO: True
RBS: 2.483, -3.831
F: Hypothetical Protein
SIF-Blast: hypothetical protein NCBI, KeaneyLin, AXH44213, 100%, 5.91908e-22
Sif: HHPRed: NFK, no matches with a probability above 90
SIF-Syn: Upstream is hypothetical protein, Downstream is Hypothetical Protein

CDS 46369 - 47679
gene="78"
product="DNA helicase"
function="DNA helicase"
locus tag="SEA_BENITOANTONIO_78"
Original Glimmer call @bp 46369 has strength 4.73; Genemark calls start at 46369
SSC: 46,369-47,679
CP: Yes
SCS: Both 
ST: SS 46369
Blast-start: Correa, ASR80136, Q:1, S:1, 100%, 0
Gap: 3
LO: True
RBS: 1.727, -5.360
F: DNA helicase
SIF-Blast: ATP-dependend helicase, NCIB, Correa, ASR80136, 99.7706%, 0
SIF-HHPred: Chromatin remodeling, 6VZ4_K, 92.4312%, 100%
SIF-Syn: Upstream is Hypothetical protein, Downstream is Hypothetical protein

CDS 47708 - 48526
gene="79"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_79"
Original Glimmer call @bp 47708 has strength 6.02; Genemark calls start at 47708
SSC: 47708- 48526
CP : Yes
SCS : Both
ST : SS 47708
BLAST-  Aligns with Arcadia, ASR80043, Q1:S1,100%, 0
GAP: 28
LO: Yes
RBS: 3.411, -2.305
F: Hypothetical Protein
SIF BLAST: Hypothetical Protein, NCBI, Arcadia, ASR80043, 100%, 0
SIF HHPred: PGDYG protein PF14083.9, 39.3382%, 90.8% 
SIF Syn: Upstream DNA helicase, Downstream Hypothetical Protein

CDS 48595 - 48726
gene="80"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_80"
Original Glimmer call @bp 48595 has strength 7.02; Genemark calls start at 48595
SSC: 48595- 48726
CP : Yes
SCS : Both
ST : SS 48595
BLAST- Start: Aligns with Kardesai, QXO12989,  Q:1,S:26, 100, 2.60814e-19
GAP: 68
LO: Yes
RBS: 0.579, -8.784
F: Hypothetical Protein
SIF BLAST: Hypothetical Protein, NCBI, Kardesai, QXO12989, 100%, 2.60814e-19
SIF HHPred:  NKF, no matches with a probability above 90%
SIF-Syn: Upstream Hypothetical Protein, Downstream Hypothetical Protein

CDS 48763 - 49224
gene="81"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_81"
Original Glimmer call @bp 48763 has strength 7.68; Genemark calls start at 48793
SSC: 48763- 49224
CP : Yes
SCS : Both
ST : SS 48763
BLAST-Start: Aligns with Arcadia, ASR80045, Q:1, S:1, 100%, 8.97227e-85
GAP: 36
LO: Yes
RBS: 2.305, -4.253
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Arcadia, ASR80045, 100%, 8.97227e-85 
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream is Hypothetical Protein, Downstream is Hypothetical protein

CDS 49224 - 49445
gene="82"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_82"
Original Glimmer call @bp 49224 has strength 4.32; Genemark calls start at 49224
SSC: 49209- 49445	
CP : Yes
SCS : Both
ST: SS 49209
BLAST-Start: Aligns with GoCrazy, QXO13578, Q:1, S:1, 100%, 6.82118e-47
GAP: -16
LO: Yes
RBS: 2.505, -3.867	
F: Hypothetical protein
SIF-BLAST:  Hypothetical protein, NCBI, GoCrazy, QXO13578, 100%, 6.82118e-47
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: upstream is Hypothetical protein, Downstream is hnh endonuclease

CDS 49480 - 50154
gene="83"
product="HNH endonuclease"
function="HNH endonuclease"
locus tag="SEA_BENITOANTONIO_83"
Original Glimmer call @bp 49480 has strength 8.81; Genemark calls start at 49480
SSC: 49480- 50154
CP : Yes
SCS : Both
ST : SS 49480
BLAST-Start:  Aligns with Kardesai, QXO12991, Q:1, S:1, 100% 6.98822e-160
GAP: 34
LO: yes
RBS: 2.48, -4.489
F:hnh endonuclease
SIF BLAST:  hnh endonuclease, NCBI, QXO12991, 100%, 6.98822e-160
SIF HHPred: Intron-encoded homing endonuclease I-HmuI, d1u3em1, 42.4107%, 99.7%
SIF Syn : Upstream Hypothetical protein, Downstream Hypothetical protein

CDS 50151 - 50555
gene="84"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_84"
Original Glimmer call @bp 50151 has strength 7.88; Genemark calls start at 50151
SSC: 50151-50555	
CP : Yes
SCS : Both
ST: SS 50151
BLAST- Start: Aligns Keaneylin, AXH44220, Q1:S1, 100%, 6.07356e-96
GAP: -4
LO: Yes
RBS: 2.305, -4.270
F: Hypothetical Protein
SIF BLAST:  Hypothetical Protein, NCBI, Keaneylin, AXH44220, 100%, 6.07356e-96
SIF HHPred: Intron-encoded homing endonuclease I-HmuI, d1u3em1, 47.7612%, 99.5%
SIF Syn : Upstream is hnh endonucleus, Downstream thymidylate synthase

CDS 50552 - 51358
gene="85"
product="thymidylate synthase"
function="thymidylate synthase"
locus tag="SEA_BENITOANTONIO_85"
Original Glimmer call @bp 50552 has strength 8.05; Genemark calls start at 50552
SSC: 50552-51358
CP : Yes
SCS : Both
ST : SS 50552
BLAST- Start : Aligns with NapoleonB, QFP95055, Q:1, S:1, 100%, 0
GAP: -4
LO: yes
RBS: 3.263 -2.334
F: thymidylate synthase
SIF-BLAST: thymidylate synthase, NCBI, QFP95054, 100%, 0
SIF-HHPred: Thymidylate synthase {Escherichia coli [TaxId: 562]}, d4iw5a_, 98.1343%, 100%
SIF-Syn : Upstream Hypothetical protein Downstream Hypothetical protein

CDS 51378 - 51737
gene="86"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_86"
Original Glimmer call @bp 51378 has strength 7.93; Genemark calls start at 51378
SSC: 51378, 51737
CP : Yes
SCS : Both
ST:  SS 51378
BLAST- Start: Aligns with Tribby, ASR80542, Q:1, S:1, 100%, 2.56617e-77
GAP: 19
LO:  Yes
RBS: 2.106, -5.899
F: Hypothetical protein
SIF-BLAST: hypothetical protein NCBI Tirbby ASR80542 100% 2.5804e-77
SIF HHPred: NKF, no matches with a probability above 90%
SIF Syn: Upstream is thymidylate synthase, downstream is Hypothetical Protein

CDS 51737 - 52045
gene="87"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_87"
Genemark calls start at 51737
SSC: 51734-52045
CP : Yes
SCS : GM
ST : SS Start: 51737
BLAST-Start: Aligns with Kardesai, QXO12996, Q:1, S:1, 100%, 1.23008e-68
GAP: -1
LO:  No
RBS: 3.322, -2.214
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, QXO12996, 100%, 1.23008e-68
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is Hypothetical protein,  Downstream is Hypothetical protein

CDS 52042 - 52281
gene="88"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_88"
Original Glimmer call @bp 52042 has strength 5.12; Genemark calls start at 52108
SSC: 52042- 52281
CP : Yes
SCS : Both
ST : SS 52042
BLAST-Start: Aligns with Mudcat , YP_009300775, Q:1, S:1, 100%, 3.48285e-50
GAP: -4
LO: Yes
RBS: 2.375, -4.129
F: Hypothetical protein
SIF-BLAST: hypothetical protein, NCBI, Mudcat, YP_009300775, 100%, 3.350216e-50
SIF HHPred: NKF, no matches with a probability above 90%
SIF Syn : Upstream is Hypothetical protein,  Downstream is PnuC-like Nicotinamide riboside transporter

CDS 52281 - 52538
gene="89"
product="PnuC-like Nicotinamide riboside transporter"
function="PnuC-like Nicotinamide riboside transporter"
locus tag="SEA_BENITOANTONIO_89"
Original Glimmer call @bp 52281 has strength 5.42; Genemark calls start at 52281
SSC: 52281-52538
CP : Yes 
SCS : Both
ST : SS 52281
BLAST- Start: Aligns with Heisenberger, YP_009300776, Q:1, S:1, 100%, 7.09975e-54
GAP: 0
LO:  Yes
RBS: 2.722, -4.256
F: PnuC-like Nicotinamide riboside transporter
SIF-BLAST: Hypothetical Protein, NCBI, Heisenberger, YP_009300776, 100%, 7.09975e-54
SIF-HHPred: NMN_transporter; Nicotinamide mononucleotide transporter, PF04973.15, 83.5294%, 99.6%
SIF-Syn : Upstream Hypothetical protein, Downstream Hypothetical protein

CDS 52522 - 52746
gene="90"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_90"
Original Glimmer call @bp 52522 has strength 7.45; Genemark calls start at 52522
SSC: 52375-52746	
CP : Yes 
SCS : Both
ST : SS 52522
BLAST-Start: Aligns with Mudcat, YP_009300777, Q:1, S:1, 100%, 2.4613e-45
GAP: -17
LO:  Yes
RBS: 2.573, -3.791
F: Hypothetical Protein
SIF-BLAST: Hypothetical Protein, NCBI, Mudcat, YP_009300777, 100%, 2.4613e-45
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream PnuC-like Nicotinamide riboside transporter,  Downstream Hypothetical protein

CDS 52770 - 53216
gene="91"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_91"
Original Glimmer call @bp 52812 has strength 3.46; Genemark calls start at 52773
SSC: 52770-53216	
CP : Yes 
SCS : Both
ST : SS 52770
BLAST-Start: Aligns with Keaneylin, AXH44229, Q:1, S:10, 95.2703, 4.6669e-86
GAP: 23
LO:  Yes
RBS: 2.573, -3.791
F: hypothetical protein
SIF BLAST: hypothetical protein, NCBI, Keaneylin, AXH44229, 95.2703, 4.6669e-86
SIF HHPred: NKF, no matches with a probability above 90%
SIF-Syn : Upstream is Hypothetical protein, Downstream is Hypothetical protein

CDS 53213 - 53464
gene="92"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_92"
Genemark calls start at 53213
SSC: 53213-53464
CP: Yes
SCS : GM
ST : SS 53213
BLAST- Start: Aligns with Arcadia, ASR80060, Q:1, S:1, 100%, 8.27024e-51
Gap : -4
LO: Yes
RBS: 3.169 -2.584
F: Hypothetical protein
SIF-BLAST:  Hypothetical protein, NCBI,Arcadia, ASR80060,97.5904%,8.27024e-51
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn : Upstream Hypothetical protein Downstream Hypothetical protein

CDS 53461 - 53709
gene="93"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_93"
Original Glimmer call @bp 53461 has strength 4.12; Genemark calls start at 53461
SSC: 53461-53709
CP : Yes
SCS : Both
ST: SS: 53461
BLAST- Start: Aligns with Arcadia, ASR80055, Q:1, S:1, 100%, 5.57754e-52
Gap : -4
LO: Yes
RBS: 2.391 -5.117
F: Hypothetical protein
SIF-BLAST:  hypothetical protein, NCBI, Arcadia, ASR80055,100%, 5.57754e-52
SIF-HHPred: NKF, no matches with a probability above 90%
SIF-Syn : Upstream is Hypothetical protein, Downstream is Hypothetical protein

CDS 53814 - 53951
gene="94"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_94"
Genemark calls start at 53814
SSC: 53814-53951
CP: Yes
SCS: GM
ST: SS 53814
BLAST-Start: Aligns with phage Mudcat, YP_009300780, Q:1,S:1,100%, 9.74603e-22
GAP: 104
LO: True
RBS: 1.781, -5.332
F: Hypothetical protein
SIF BLAST: Hypothetical protein, NCBI, Mudcat, YP_009300780, 100%, 9.74603e-22
SIF HHPred: NKF, no matches with a probability above 90%
SIF-Syn: Upstream is hypothetical protein,  downstream is hypothetical protein

CDS 54148 - 54450
gene="95"
product="Holliday junction resolvase"
function="Holliday junction resolvase"
locus tag="SEA_BENITOANTONIO_95"
Original Glimmer call @bp 54148 has strength 2.34; Genemark calls start at 54148
SSC- 54148- 54450
CP: Yes
SCS: BOTH
ST: SS 54148
BLAST-Start: Aligns with Correa, ASR80150, Q:1, S:1, 100%, 2.7303e-68
GAP: 196
LO: False
RBS:  3.411, -2.095
F: Holliday junction resolvase
SIF BLAST:  Holliday junction resolvase, NCBI, Correa, ASR80150, 100%, 2.7303e-68
SIF HHPred: stNUC, d4qboa1, 95%, 99.9
SIF-Syn: Upstream is hypothetical protein,  Downstream is exonuclease

CDS 54416 - 54994
gene="96"
product="exonuclease"
function="exonuclease"
locus tag="SEA_BENITOANTONIO_96"
Original Glimmer call @bp 54416 has strength 10.4; Genemark calls start at 54416
SSC: 54416-54994
CP: Yes
SCS: Both 
ST: SS 54416
BLAST-Start: Aligns with Circum, YP_009603186, Q:1, S:1, 100%, 6.13048e-142
Gap: -35
LO: yes
RBS: 2.239 -4.976
F: exonuclease
SIF-BLAST: exonuclease NCBI Circum YP_009603186 100% 6.13048e-142
SIF-HHPred: DUF2800, PF10926.11, 89.0625%, 99.6
SIF-Syn: upstream is hypothetical protein, downstream is helix-turn-helix DNA-binding protein

CDS 54991 - 57666
gene="97"
product="helix-turn-helix DNA binding domain"
function="helix-turn-helix DNA binding domain"
locus tag="SEA_BENITOANTONIO_97"
Original Glimmer call @bp 54991 has strength 11.71; Genemark calls start at 54991
SSC: 54991-57666
CP: Yes
SCS: Both 
ST: SS 54991
BLAST-Start: Aligns with Arcadia, ASR80058, Q:1, S:1, 100%, 0
Gap: -4
LO: yes
RBS: 2.069 -4.810
F: helix-turn-helix DNA-binding protein
SIF-BLAST: helix-turn-helix DNA-binding protein NCBI Arcadia ASR80058 100% 0
SIF-HHPred: RdRP ; RNA dependant RNA polymerase, PF05183.15, 22.3345, 98.4
SIF-Syn: Upstream is exonuclease, downstream is hypothetical protein

CDS 57678 - 57935
gene="98"
product="Hypothetical Protein"
function="Hypothetical Protein"
locus tag="SEA_BENITOANTONIO_98"
Original Glimmer call @bp 57678 has strength 5.79; Genemark calls start at 57678
SSC: 57678-57935
CP: Yes
SCS: Both 
ST: SS 57678
BLAST-Start: Aligns with Circum YP_009603188 q1:s1 100% 2.09412e-56
Gap: 11
LO: yes
RBS: 3.069 -3.173
F: hypothetical protein
SIF-BLAST: hypothetical protein NCBI Circum YP_009603188 100% 2.09412e-56
SIF-HHPred: NFK, no matches with a probability above 90
SIF-Syn: upstream is helix-turn-helix DNA-binding protein